Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1220 ATGAAGGCTATGTCAAAGATAGTTAGTCCTATTGGGAAGTTAATAAAGCAAAATCAAGCAACAAGTAATAGAGATAGACTTCATTATGCTCGGGTGTTGATAGAAGTAACTGTTCATCAGGAATTTCCAGCATCTATAACTTTTGAAGATGAGAAAGGACAACAAAATGTGGTTGATCTTGTGTATGAATGGAAACCAGACAAATGCGAGTTGTGTAAGGGTGTGAGACATTTAGAAGAGAAATCGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCCGCGGAGATGGATACTACGCTTGAAGAAGCGAGCCCAACGTAGAGAAAGCATGGGGCCATCAGAGAAAACAGTAAGGATAACGAGCGCGGAGCCTGCCAAGCGGGCGACAAGAGCTGCGGGCAACAAGTGCTTGGTAGGCCAACAACACAATGAATCGGGCGGGGCACTCGGAGAAAGGGGGGCACTGAGCAATCTACACATAATGCTGATGGATCCTTTAGAAGAAGAAACCAGCTCCACTTCAAATAATAATTCACTCCAAATTCGTCAATTACTAATCCGTTCTGCCCATTTCATTTCTCAATCTGATTTGCTCTCAGCTCATCGCCTTCTCTCCATTCTCTCTTCAAATTCCTCCCCTTATGGAGATTCCACAGAGAGATTAGTTCATTATTTCTCCACTTCACTTTCCCATTGCCTCCCTTCAAATTCTTCTCTTCCTGACCCTCCTTTGAAAATTGATGATCTTGATGATGAACAAGAAAAAAAGATCCAATCTTGTTATTTATCATTGAATCAAATCACACCCTTTATTAGATTCTGTCATTTGACTGCAAATCAAGCAATTTTGGAGGGTGTTGAGGAAGGAAGTGGTGGGATTCATGTTTTGGATTTTGATATAATGCATGGTGTTCAATGGCCTCCTTTGATGCAGGCTTTGGCTGAGCGGTTTCCTTCTCCTTTGCTTCGTATTACAGCCACTGGTCGTGATCTTACCTTTCTTCATAAGACGGGTGATAGGCTTTCTAAATTTGCTCTCTCTCTTGGCTTGAGGTTTCACTTTCATCCTCTTCTTCTTAACCATGACCATGACCATCACCGGCTCATCCCTGCCGCTCTAACACTCTTCCCCGACGAAGCGCTCGCTGTTAACTGCGTCCTCTACCTGCACAGGCTATTGAAGGACGATCTTCGGCTATTGCTTCATAAAATCAAGGCTTTGAATCCGAAAGTTGTGACGATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCTCTAATATTTGACTCATTGGAAGCAACTTTGCCTCCAAATAGTAGAGAGAGGCTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCGGGGGAAGGGAACAAGAGAAGACAACGCCATGAGAGGTGTTCTTTCAATGGGAAAGCTGAAACCGACAAGTGA 1503 43.31 MKAMSKIVSPIGKLIKQNQATSNRDRLHYARVLIEVTVHQEFPASITFEDEKGQQNVVDLVYEWKPDKCELCKGVRHLEEKSIPVSQRTLCLAIWKYPRRWILRLKKRAQRRESMGPSEKTVRITSAEPAKRATRAAGNKCLVGQQHNESGGALGERGALSNLHIMLMDPLEEETSSTSNNNSLQIRQLLIRSAHFISQSDLLSAHRLLSILSSNSSPYGDSTERLVHYFSTSLSHCLPSNSSLPDPPLKIDDLDDEQEKKIQSCYLSLNQITPFIRFCHLTANQAILEGVEEGSGGIHVLDFDIMHGVQWPPLMQALAERFPSPLLRITATGRDLTFLHKTGDRLSKFALSLGLRFHFHPLLLNHDHDHHRLIPAALTLFPDEALAVNCVLYLHRLLKDDLRLLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVSGEGNKRRQRHERCSFNGKAETDK 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61818709 61825056 - Hsped.06g12200.1 Hepe06g1220 572595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1220 500 Pfam GRAS domain family 187 489 IPR005202 -
Hepe06g1220 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 490 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
Hepe06g1220 500 MobiDBLite consensus disorder prediction 479 500 - -
Hepe06g1220 500 ProSiteProfiles GRAS family profile. 177 500 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1220 K27746 - - csv:101213853 455.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1220 Hepe-Chr6:61818709 Hepe07g0886 Hepe-Chr7:11434288 4.32e-46 dispersed
Hepe06g1220 Hepe-Chr6:61818709 Hepe04g0646 Hepe-Chr4:59714816 2.54e-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g799 . . . . . . . . Cmo16g01054 . . . . . . . . . . . . . . . Cla10g00339 Cam10g0352 Cec10g0366 Cco10g0360 Clacu10g0353 Cmu10g1189 Cre10g0600 . . . . . Csa03g00359 . Cme06g02676 . Blo10g00896 . . . . . . Sed08g2851 . . . . . . Cpe14g00831 . Bhi11g00376 Tan01g1930 Cmetu06g2650 . Hepe06g1220 Mch10g1457 . . . . . . . . . . Chy06g01964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008597 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55784 PF03514 GRAS 1.00E-89 CL0063 Hepe TF