Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1228 ATGGCCTCAAGCTCCTCCAAGAAACATGATCACTACAAGGGAATCCGATGCCGGAGCGGAAAATGGGTGTCCGAGATCCGAGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTACCCTACACCGGAAATGGCTGCTGCTGCCTACGATGTGGCTGCCCTCGCTCTCAAGGGTTGCAATGCTGTTCTCAACTTCCCTGACTCAATTGGGTCCTACCCGGTTCCGGCTTCCATGTCCCCGGCCGATATCCGTCTTGCTGCCGCTGCTGCTGCGGCGTCGAAAAAGGTTGATCGAGGTGAAAGCAATTACAATAGCTGTTACCAGTCTCCGCCGTCCAATGGCTCGGTCGAGGAGTTCGTCGATGAAGAGGCACTGTTCGGAATGCCGAATCTGCTGGTCGATATGGCAGAGGGAATGCTGTTGTCGCCACCGCGAATGAGCTCGTCCCCGCCCCGATACGACTACTACTCGTGGAACTCCACCGGAGATGGAAATCTATGGAGCTACCATTAA 516 55.43 MASSSSKKHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSIGSYPVPASMSPADIRLAAAAAAASKKVDRGESNYNSCYQSPPSNGSVEEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPPRYDYYSWNSTGDGNLWSYH 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61983972 61985675 - Hsped.06g12280.1 Hepe06g1228 572603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1228 171 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1228 171 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1228 171 FunFam Ethylene-responsive transcription factor 2 10 68 - -
Hepe06g1228 171 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1228 171 SMART rav1_2 11 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1228 171 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677(InterPro)
Hepe06g1228 171 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1228 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 134 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1228 Hepe-Chr6:61983972 Hepe07g0191 Hepe-Chr7:1706803 1.91e-58 dispersed
Hepe06g1228 Hepe-Chr6:61983972 Hepe06g1584 Hepe-Chr6:66597853 9.09e-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55785 PF00847 AP2 5.70E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1228 - - - 0.0