Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1230 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCTCCAAGGAATCGATTGAGAAGTGAAGCACCGCCGCAGTTTCAAGCTTGCCATTTGCACCTACCCCCTTCAATGAGCACACAGAGATTGGATTTACCCTGCAGCTTTTCCCGCTCGAAAGACGTCGCCTCTGCCCGATCGCCGTCGATCCGCCCGGTTGCGCTCTCTGTTGATAAGCAGAATATCAGGCTCCCGCCGCTGTCCGCGACCAACCAGCAGATCAAGCAAGAGTTTTGGAAGAATAAAGGTAAGAACTTGAAGAGAATTGCAGAACAGATTGGTATTGATGATGATGAATCTTCCATTAGCAGCGCCAAGAGGAAGCGAGAGAGTAGAGACGGCGGCGGAGACAACGGGTTGATTCTGAGCCAATTAGGCAGCGGCGTAGGGACTTTCTGGTTTCATCAGCCAGATGAGGATGAAGAAGAAGGACTCTGTTTTCTTCCTGGCAGTGAAGTAATTTCTTCGCCGTCACCATTCTTGTTGGAGATTGCTGATTTGGGAGAAGGAAATGATGGAGAAAGCAGGCATGTGAAGGCTCAGGATGGGTCTGGCTCCGGATCGGGATCGGGGTCGGGGTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTGAGAAGAAGAGTAACAACAGAGAATGTTCCAACAACAGCAGTAGCAGCAGCAACAGGTGTAGAAATTGGAAATGGAAGCTCAAGAAATCCATCATATCATCACCATCAAGGATCTGGTTTGGATAATCAAAGAGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTGGAAGCAATTGGATCAAAGAACATTGGATTGGTAAACCATTTTATAGAGAAACTTGGGAGTCAAGCATCTCCAAGAGGGTTATCACCAATTACACGTTTGATTGCATATTACACAGAGGCTCTGGCAGTTAGGGTGAGCAGAGTTTGGCCACAGGTGTTTCACATAACGACGCCGAGGGAATACGATCGGATGGAGGACGATACGGGGACAGCGGTACGACTTCTGAACGAGGTGAGCCCGATCCCGAAATTCATCCAGTTCACAGCGAATGAGATGTTGCTGAGAGCATTTGAAGGGAAAGACAAGGTTCACATCATAGACTTTGACATAAAGCAAGGGTTGCAATGGCCAAGCTTGTTCCAGAGTTTGGCTTCTAGAGCAAACCCTCCAAGTCATGTGCGAATCACCGGGATCGGTGAGTCGAAGCAGGAATTGAACGAAACGGGAGATAGGCTGGCGGGGTTTGCCGAGGCATTGAGGCTGCCGTTCGAGTTCCACACGGTGGTGGACCGGTTGGAGGATGTGAGGTTGTGGATGCTTCATGTGAAGGAGCAAGAGAGTGTGGGTGTAAATTGCAATCTCCAACTGCACAAGACTCTGTATGATGGGAATGAGGGAGCATTGAGGGACTTTTTGGGGCTCATCAGAAGCACAAATCCAACCATTGTTGCCATGGCCGAGCAAGAAGCCGACCACAACGAACCAGCCTTCGACACTCGAGTAGCAACCACACTCAAGTACTACGCCGCTGTATTTGACTCCCTCAACGCTACCCTTCCACCCGACAGCTCAACCAGGTTGAAAATTGAAGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGACAGGTATGAAAGACATGTTCCATTTCACAAATGGAAGAAGGTTATGGAGCAACAAGGAGGCTTGCAATGCCTTGGGATTCACGACGACGATCGAGAGCTTCTTCAGTCCCAATTCCTCTTGAAGATGTACTCTTCTTCCGCTGATGGATTCAATGTCACAAAGATTCAAGCAGAAGGAGCTGAAGCAGTTTGCCTAAATTGGGAAGATCAGCCACTTTACACTGTCTCAGCATGGACACCGGCAGAAGTTTCTGGAAGCTCATCTTCATTTAACCATCCAACTTCTTGA 1977 48.31 MLAGCSSSTLLSPRNRLRSEAPPQFQACHLHLPPSMSTQRLDLPCSFSRSKDVASARSPSIRPVALSVDKQNIRLPPLSATNQQIKQEFWKNKGKNLKRIAEQIGIDDDESSISSAKRKRESRDGGGDNGLILSQLGSGVGTFWFHQPDEDEEEGLCFLPGSEVISSPSPFLLEIADLGEGNDGESRHVKAQDGSGSGSGSGSGSSSSSESERFALRRRVTTENVPTTAVAAATGVEIGNGSSRNPSYHHHQGSGLDNQREEEEGFELISLLMACVEAIGSKNIGLVNHFIEKLGSQASPRGLSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTAVRLLNEVSPIPKFIQFTANEMLLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHTVVDRLEDVRLWMLHVKEQESVGVNCNLQLHKTLYDGNEGALRDFLGLIRSTNPTIVAMAEQEADHNEPAFDTRVATTLKYYAAVFDSLNATLPPDSSTRLKIEDMFGREIRNMIACEGRDRYERHVPFHKWKKVMEQQGGLQCLGIHDDDRELLQSQFLLKMYSSSADGFNVTKIQAEGAEAVCLNWEDQPLYTVSAWTPAEVSGSSSSFNHPTS 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 62029764 62031740 - Hsped.06g12300.1 Hepe06g1230 572605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1230 658 MobiDBLite consensus disorder prediction 237 260 - -
Hepe06g1230 658 MobiDBLite consensus disorder prediction 238 253 - -
Hepe06g1230 658 Pfam GRAS domain family 269 642 IPR005202 -
Hepe06g1230 658 MobiDBLite consensus disorder prediction 192 211 - -
Hepe06g1230 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 243 641 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe06g1230 658 MobiDBLite consensus disorder prediction 179 220 - -
Hepe06g1230 658 MobiDBLite consensus disorder prediction 108 126 - -
Hepe06g1230 658 ProSiteProfiles GRAS family profile. 259 642 IPR005202 -
Hepe06g1230 658 MobiDBLite consensus disorder prediction 108 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1230 K27749 - - csv:101209060 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0646 Hepe-Chr4:59714816 Hepe06g1230 Hepe-Chr6:62029764 6.85e-59 dispersed
Hepe06g1230 Hepe-Chr6:62029764 Hepe09g0722 Hepe-Chr9:6884803 2.07e-63 dispersed
Hepe06g1230 Hepe-Chr6:62029764 Hepe06g1232 Hepe-Chr6:62053118 7.83e-235 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g614 . . . . Bpe09g00134 . . Bma13g01108 Cmo16g00983 . . . . . . . . . . . . . . . Cla10g00432 Cam10g0430 Cec10g0453 Cco10g0442 Clacu10g0438 Cmu10g1269 Cre10g0686 . . Cone14ag1207 . . Csa03g00440 . Cme06g02786 . Blo10g00862 . Bda12g00952 . . . . Sed08g2939 . . . Cma16g00944 . Car16g00908 Cpe14g00768 . Bhi11g00497 Tan01g1808 Cmetu06g1047 . Hepe06g1230 . . . . . . . . . Lsi05g00522 . Chy06g01877 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004828 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 0 4 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55786 PF03514 GRAS 2.50E-119 CL0063 Hepe TF