Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1233 ATGGCGATGCCTTCTCGGGAAGCAATTGATACTTTCATCAGCGTCACCGGTGCCTCCGAAGCGATCGCCGTTCAGAAGCTCGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATTCATATTTTACTGAAGGAGATAGAAGTTCGTCCGTAAATGCACGGCCAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCTTTACTTGATCAAAATCTCCACCAGGGTTTCTTTGACCGCGCCTCTGAATTTACAAGTTCTGCTCCAATTGTGACTCATCCAAGAGACCGGAGGGAGATTCCCATAGAATTTAGAGATGGTAATCGACCATCTGCCCCTGTGCCGACAATTGAGGATGTCACTGGGACTGTAGATGCCCATGGTCCAGAGGTTCATGGGACTGTTGTAATTGATGATAAGGAAGATGAAGAACCTCCAGTTACTTCTATAGCACATGCACCAGATTTAGAGCATCGGGCTATTGCAAGTAACATATCTCGTGACAGAAATGCTATATCCGGTGCCTTTGAAAGTGATGAGTTTCAGGACACAAATGACATTGAAGAAGAAATGATCCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGTGCAAGCTTATCCAAGTGATCCCTTAACTACACACACTGATTCAAGCAACCTTAGGCCTCGAGAACATCTTTCTCACTTGAATGATTTTGAATTTTCGCCTGCAGCTTCATCTATCAAGCCAGAGGAAGATTTCCCTGAGCGAGGGAAGAACATTGGAGGATCGGAAATAGAAGCTTCTAAGTTAACTGAGGTGGAGCTGAGGAAAGTCACAGCATTAAATGGAAGGATGGAAACAGGAAGCACGTCTGCTCAAGATGAGGTTGAAGACCTAGAACAAGATAATTTAGTAAGGCATCGGTCCAAGCGCAAGTCCTCTGGCTATGTTGAGCCTGCAAAGGGGGTTGAAGTTGGTGATGTAAGCCCTCCATCAAGCCCCAGACATCAAGATACTAGTAATAATCCACAGCACAATGGGAATGTCTTTCATTCTGACGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATTTCTACAGCCAGCCCCTCGCCCTCCTTCACCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTGGCAGCTTTGCAAGCTGACAGAGAAAAAGAACTAAAGGCCATGGCAGAAGCTGCAGCTGTTCTTGAAAAAGAAAAACAAAGAGAGGAAGAATCTCGTCAGAAATTGGATGCTGAGAAGGCTCATCCAAATCAGATAGCAGACTATCCCACAAAACTCACAACAAACAATGGTAACAAAGGTATCTCCACATCTTATGAGCTTGCTGATTTCTATTCGGAGAGGGTTATAATCATCCATAGGCGCCATCTTCATGATGAATGGACCGAAATCTCAAAGGTAAACCAACTAGAGGTCACAAACTCCGGTACTATCAACCCTTTTCAACCCGATAGCGCTCTTCTATCGGTTCTTGATATGGAACAGGGCAAGACTTTATGCAAAAACAGAGGATGGCAAATGGTTGGAAGATTTCTCATTAAGTATGAACCATGGAGTTCTGAAGCCTTCATTAGGAGCCCCACTGTTCTCTTTTATGGTGGCTGGATTAAGGTAAGATACCTACCAGTTGATAAATGGTCCTTAGATATATTCAAAGACATTGGAGATGCTTGTGGAGGGTTTTTGGAAGTTGCCAAGAAGACATTATTAAGATTAAACATGATGGAGGTTAGTATCAAGGTTGAAGTTAATGTTTATGGCTTTATTTCAGCTGAAATCGAGCTCCCATTTTCACCCCTCTCCTACTCAGATTACTCTCTTTGCACGCGCGGACCCCAACACTGA 2067 44.07 MAMPSREAIDTFISVTGASEAIAVQKLEAHGADLNAAVNSYFTEGDRSSSVNARPTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLHQGFFDRASEFTSSAPIVTHPRDRREIPIEFRDGNRPSAPVPTIEDVTGTVDAHGPEVHGTVVIDDKEDEEPPVTSIAHAPDLEHRAIASNISRDRNAISGAFESDEFQDTNDIEEEMIRAAIEASKKDVVQAYPSDPLTTHTDSSNLRPREHLSHLNDFEFSPAASSIKPEEDFPERGKNIGGSEIEASKLTEVELRKVTALNGRMETGSTSAQDEVEDLEQDNLVRHRSKRKSSGYVEPAKGVEVGDVSPPSSPRHQDTSNNPQHNGNVFHSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSFLQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMAEAAAVLEKEKQREEESRQKLDAEKAHPNQIADYPTKLTTNNGNKGISTSYELADFYSERVIIIHRRHLHDEWTEISKVNQLEVTNSGTINPFQPDSALLSVLDMEQGKTLCKNRGWQMVGRFLIKYEPWSSEAFIRSPTVLFYGGWIKVRYLPVDKWSLDIFKDIGDACGGFLEVAKKTLLRLNMMEVSIKVEVNVYGFISAEIELPFSPLSYSDYSLCTRGPQH 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 62057624 62065355 - Hsped.06g12330.1 Hepe06g1233 572608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1233 688 MobiDBLite consensus disorder prediction 354 371 - -
Hepe06g1233 688 MobiDBLite consensus disorder prediction 262 287 - -
Hepe06g1233 688 Pfam Domain of unknown function (DUF4283) 558 653 IPR025558 -
Hepe06g1233 688 CDD UBA_Ubx1_like 6 42 - -
Hepe06g1233 688 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515(InterPro)
Hepe06g1233 688 MobiDBLite consensus disorder prediction 303 378 - -
Hepe06g1233 688 Pfam UBA-like domain 6 47 - -
Hepe06g1233 688 Coils Coil 459 489 - -
Hepe06g1233 688 MobiDBLite consensus disorder prediction 321 339 - -
Hepe06g1233 688 Gene3D - 5 45 - -
Hepe06g1233 688 PANTHER FAS-ASSOCIATED PROTEIN 8 486 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0402 Hepe-Chr4:53265630 Hepe06g1233 Hepe-Chr6:62057624 1.02e-26 dispersed
Hepe05g1914 Hepe-Chr5:69491792 Hepe06g1233 Hepe-Chr6:62057624 2.86e-10 dispersed
Hepe06g0359 Hepe-Chr6:13508298 Hepe06g1233 Hepe-Chr6:62057624 1.64e-24 dispersed
Hepe06g1233 Hepe-Chr6:62057624 Hepe07g1353 Hepe-Chr7:44629839 8.30e-57 dispersed
Hepe06g1233 Hepe-Chr6:62057624 Hepe04g0007 Hepe-Chr4:2305633 6.26e-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44