Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1242 ATGGGGAGGACTGATGATAATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGCTCGAGAACCTTTTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGTCTTGGATACTACTACCATGAGTGATAAAACTGAAGGACTCTTTCTCAGGCCTCGAGAACATACGGTATTCGAGAACGCCATTGCAAGAGGCGGGATCCCGGGTGTCAATTATGGCGACCGATCGACGGAGTTCGGTGCGTTCTCGGAACAGCAGAAATTCCGCGGGGGACTTGTGGAAAGGATTGCAGCTAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACAGAGCACTCTCTGAATTCAGAAGTTAAGTCTCCTTACTTGACGATACCGCCGGGCCTCAGTCCAACTACATTGCTTGATTCTCCAGTTTTTCTTTCGAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCATTTTTGCCATATGTTAGCAATCGGAGCTCGACGATGATGTCGGAGGCCAACAATAAAGGTAGCGACTATCCATTCGATGATAACAGTGCATCATTTGCTTTCAGACCCGGTGTGGAATCAGGATCGACCTTTTTTCTCAGTGCAGCAAGCAAAACAGCTTCTGCTACTATTCCTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACATTCAGAAAATTCTTTTCAATCTCATCATCTTCTAGAGCCATCTCTGTCTTTACCCCAAAATAGAATCAGCCATCATCCTCAAGTGGGACTCTCTACATCATGTGCGGAGAGGGACGATGGGGGAAAGACCGTGTCAGACGATCAAAGACCCTTTGATTCTATGTGTGGTGGTGGTGAACATTCTTCACCGCTCGACGAGCAACCGGACGAAGGGGAGCAAAGAGGCAGTGGGGATTCTTTGGCCGGTGGTGGTTGCGGTGCTCCCTCGGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCCCGAAGTTATTACAAGTGTACACATTCAAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCCCACGAGGGCCATATAACGGAGATCATCTATAAAGGAGCACATAACCATCCAAAGCCCTCGCCAAACCGGCGAGCAGCAATCGGATCTTCTGATTCCCATATCACTATGCAACTTGACATCTCAGCACAAGCAGGCCAACAGAGCGCTGAAGGAGGTCCCCTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGACTGGATGCATGAAAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCATTTACAGGCTCAAAATGGCAATCATATCGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGAAGAAGATGAAGACGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGAGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCTTATGTAACAGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTCCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCAGGCTGCACGGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAATCCGTGATCACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCACGTCAGTTCTGGCACATCCAGTCCAGTAATCACTCAAAACTCGACTGCAGCGATGCAAACTCATGTTCACAGGCCAGGGCCACCGCAGCCTCAAAACATGATTCCAAGATTTGAAAGGCCAGCCTTTGGCCTCGTCGGAAGGCAGCAGATGGGCCCTGCCCATGGCTTCTCCTTTGGAATGAACCAGCATGGACTGGGAAATCTGACAATGGCAGCAGTTGGCCAAGCCAAGTTTCCTGGTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGAAATGGGATTCTTGTTCCCTAAAGGAGAGCCCAATGTAGAACCTACTTCTGATCATGGCTTGAACTTTTCCAATGGTTCAACTGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2238 47.68 MGRTDDNNVAIIGDWVPPSPSSRTFFSAMLGEDVGSRPVLDTTTMSDKTEGLFLRPREHTVFENAIARGGIPGVNYGDRSTEFGAFSEQQKFRGGLVERIAARAGFNAPRLNTESIRSTEHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPYVSNRSSTMMSEANNKGSDYPFDDNSASFAFRPGVESGSTFFLSAASKTASATIPPQSCPRIEVPVPHSENSFQSHHLLEPSLSLPQNRISHHPQVGLSTSCAERDDGGKTVSDDQRPFDSMCGGGEHSSPLDEQPDEGEQRGSGDSLAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHITMQLDISAQAGQQSAEGGPLWEDSQKGIPTGAPDWMHENLEVTSSASLGPEYGNQPNHLQAQNGNHIETVEAIDASSTFSNEEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVSSGTSSPVITQNSTAAMQTHVHRPGPPQPQNMIPRFERPAFGLVGRQQMGPAHGFSFGMNQHGLGNLTMAAVGQAKFPGLPMHPYLAQAHHVNEMGFLFPKGEPNVEPTSDHGLNFSNGSTVYQQIMSRLPLGPEM 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 62187790 62192414 - Hsped.06g12420.1 Hepe06g1242 572617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1242 745 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 248 621 IPR044810 GO:0003700(InterPro)
Hepe06g1242 745 FunFam WRKY transcription factor 33 528 594 - -
Hepe06g1242 745 MobiDBLite consensus disorder prediction 267 332 - -
Hepe06g1242 745 ProSiteProfiles WRKY domain profile. 326 384 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 MobiDBLite consensus disorder prediction 595 616 - -
Hepe06g1242 745 Pfam WRKY DNA -binding domain 542 599 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 Pfam WRKY DNA -binding domain 326 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 SUPERFAMILY WRKY DNA-binding domain 533 601 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 SUPERFAMILY WRKY DNA-binding domain 324 384 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 ProSiteProfiles WRKY domain profile. 536 601 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 SMART WRKY_cls 541 600 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 SMART WRKY_cls 325 383 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 Gene3D WRKY domain 528 594 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 FunFam WRKY transcription factor 319 385 - -
Hepe06g1242 745 Gene3D WRKY domain 322 385 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1242 745 MobiDBLite consensus disorder prediction 477 508 - -
Hepe06g1242 745 MobiDBLite consensus disorder prediction 220 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3191 Hepe-Chr2:81462853 Hepe06g1242 Hepe-Chr6:62187790 4.12e-75 dispersed
Hepe06g0539 Hepe-Chr6:30761365 Hepe06g1242 Hepe-Chr6:62187790 2.56e-95 dispersed
Hepe06g1242 Hepe-Chr6:62187790 Hepe10g1775 Hepe-Chr10:54519892 2.66e-80 dispersed
Hepe06g1242 Hepe-Chr6:62187790 Hepe09g1283 Hepe-Chr9:17678289 1.55e-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55790 PF03106 WRKY 3.00E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1242 K18835 - csv:101207853 1256.51