Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1290 ATGGATTTCTCCGATGCTTCTTCTTCCTGCCGCTCCGACGAGGAGGTTTTGTTGGCTTCTAGATACCCAAAGAAGCGAGCTGGGAGGAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGGGGAGTCCGCCGGCGTAATTCCGGCAAGTGGGTCTGCGAGGTCAGAGAGCCTAATAAACAGACTAGGATTTGGCTTGGGACTTTTCCCACGGCGGAGATGGCGGCTCGTGCTCACGATGTCGCTGCCATCGCCCTCCGCGGCCGCTCCGCTTGCCTCAATTTTGCTGACTCTGCTTCTCGGTTGCCGTTGCCGGCTACTGTGGATGCCAAGGATATTCAGAGGGCGGCGGCGGAGGCTGCAGAGGCCTTCCGACCGCCGGATGTGGCGGTGGGTGCGGCGGCGGAGGAGGTGGAGGCGGAGGAGGTGTTTTATTTGGATGAGGAGGCGGTGTTTGGGATGCCGGGGTTGCTGGCGGAGATGGCGGAGGCAATGCTGTTGCCGCCGCCGAGTTGCGACTATGGGGCTAATTCTATGGAGTTCGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA 579 59.07 MDFSDASSSCRSDEEVLLASRYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKQTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASRLPLPATVDAKDIQRAAAEAAEAFRPPDVAVGAAAEEVEAEEVFYLDEEAVFGMPGLLAEMAEAMLLPPPSCDYGANSMEFDADMSLWSYSI 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 62893022 62893600 - Hsped.06g12900.1 Hepe06g1290 572665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1290 192 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 Pfam AP2 domain 38 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 SMART rav1_2 39 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677(InterPro)
Hepe06g1290 192 CDD AP2 40 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Hepe06g1290 192 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1290 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 190 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0347 Hepe-Chr5:4270449 Hepe06g1290 Hepe-Chr6:62893022 1.73e-42 dispersed
Hepe05g0348 Hepe-Chr5:4274443 Hepe06g1290 Hepe-Chr6:62893022 5.37e-44 dispersed
Hepe06g1290 Hepe-Chr6:62893022 Hepe07g0192 Hepe-Chr7:1719533 2.69e-82 dispersed
Hepe06g1290 Hepe-Chr6:62893022 Hepe06g1585 Hepe-Chr6:66641665 1.04e-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55793 PF00847 AP2 1.40E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1290 - - - 0.0