Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g1290 | ATGGATTTCTCCGATGCTTCTTCTTCCTGCCGCTCCGACGAGGAGGTTTTGTTGGCTTCTAGATACCCAAAGAAGCGAGCTGGGAGGAAGAAATTCAAGGAAACTCGCCACCCTGTTTACCGGGGAGTCCGCCGGCGTAATTCCGGCAAGTGGGTCTGCGAGGTCAGAGAGCCTAATAAACAGACTAGGATTTGGCTTGGGACTTTTCCCACGGCGGAGATGGCGGCTCGTGCTCACGATGTCGCTGCCATCGCCCTCCGCGGCCGCTCCGCTTGCCTCAATTTTGCTGACTCTGCTTCTCGGTTGCCGTTGCCGGCTACTGTGGATGCCAAGGATATTCAGAGGGCGGCGGCGGAGGCTGCAGAGGCCTTCCGACCGCCGGATGTGGCGGTGGGTGCGGCGGCGGAGGAGGTGGAGGCGGAGGAGGTGTTTTATTTGGATGAGGAGGCGGTGTTTGGGATGCCGGGGTTGCTGGCGGAGATGGCGGAGGCAATGCTGTTGCCGCCGCCGAGTTGCGACTATGGGGCTAATTCTATGGAGTTCGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA | 579 | 59.07 | MDFSDASSSCRSDEEVLLASRYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKQTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASRLPLPATVDAKDIQRAAAEAAEAFRPPDVAVGAAAEEVEAEEVFYLDEEAVFGMPGLLAEMAEAMLLPPPSCDYGANSMEFDADMSLWSYSI | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 62893022 | 62893600 | - | Hsped.06g12900.1 | Hepe06g1290 | 572665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g1290 | 192 | Gene3D | AP2/ERF domain | 39 | 97 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | Pfam | AP2 domain | 38 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | SUPERFAMILY | DNA-binding domain | 39 | 98 | IPR016177 | GO:0003677(InterPro) | |
Hepe06g1290 | 192 | CDD | AP2 | 40 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | FunFam | Ethylene-responsive transcription factor 2 | 38 | 97 | - | - | |
Hepe06g1290 | 192 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | PRINTS | Ethylene responsive element binding protein signature | 62 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1290 | 192 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 7 | 190 | IPR045277 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0347 | Hepe-Chr5:4270449 | Hepe06g1290 | Hepe-Chr6:62893022 | 1.73e-42 | dispersed | |
Hepe05g0348 | Hepe-Chr5:4274443 | Hepe06g1290 | Hepe-Chr6:62893022 | 5.37e-44 | dispersed | |
Hepe06g1290 | Hepe-Chr6:62893022 | Hepe07g0192 | Hepe-Chr7:1719533 | 2.69e-82 | dispersed | |
Hepe06g1290 | Hepe-Chr6:62893022 | Hepe06g1585 | Hepe-Chr6:66641665 | 1.04e-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55793 | PF00847 | AP2 | 1.40E-15 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g1290 | - | - | - | 0.0 |