Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1292 ATGGCATCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTTCAAGGAGATGGGCAGTCAAAGGCTACTGTTAAATCTCACTTGGGCTCGTCTTATGGAAACTCATCCAATTCAATTCCAGGACCTGGCCATTTAAATTTGGGTCCAGTTTCTGGGGATGGCGTGTTAAATAATGTGGCCAACTCAGGACCAAGTGTTGGGGCAAGTTCGTTGGTTACAGATGCAAACTCTGCGCTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACATGAGTCTTTCAGGTGCATCACTCATTGATGCATCTTCTGTAGTGCAGCACAATTCTCAGCAGGATCGTAATGCCCCACATTTTCCACAGACCCAGCCACAGGTCCGACAAGTTGCTCCAGGTGATACATCATTGTCAAATTCTCAAACCGTCCAAACTTCACTCCCCATGGGTACACGTGTTGCTGGATCTCTCATGACAGATACCAACAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGACGATTTTCTGCAACAGCAGGTGCTACAACAACTACTGCAGAGACAAGATTCCATGCAGCTGCAAGGTCGTAATACGCCGCAGTTACAAGCAGCATTATTTCAGCAGCAGCAGCAACAGAGATTACGACAACAGCAACAAATGTTTCAGTCTTTGCCTCCCTTGCAGAGAGCTCACCTGCAGCAGCAGCAGCAGATACAGTTAAGACAGCAACTTCAACAACAGGCAATACAACCCGCAAATGCTATGAAGCGGCCTAATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTGTACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTACTGGAGGAAGTTCGTGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATGACAATGTTGGTCATCATGCACTTGGCGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGATATTTGTGGTTCAAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCAAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCAGTTCAGGAGAGTGTATATGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTACGAATCATATTTACTCACGAACTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCACCCCAGGTGAATCAGTTGGTTCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGAACCGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCAAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGACCTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTTTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAGATGCAAGAGATTGAGCAGGCTGCTACTGCTCAGGGTCTGCCAACCGACCGTAACAGCCTCAGTAGAATGGTCGCCATGCATCCTGGGTTGAACAACCAAATGAATAGCCAAAATCAACTAATCGGCAGAGGAACTTTGAGCGGTTCGGCACAAGCTGCGTTGGCATTGTCCAACTACCAGAATCTGCTTATGAGACAGAACTCAATGAATTCAACCAATTCCAACCCACTCCAGCAGGAGACATCATCATCCTTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCATGGGACAGCTGCTTTAACATCGGGAGCGATGCAGAACTTGCCCGGTAGTGGTCTTTCAAGTCCTCGTCTACCTCCGCAACAATCTCAGCAATCTCAAGTTCAACAACTCAATCAGCGCCCAAACACCAACAACTTACACGTGCAAAACCATCCTCAGAGCGTCCAAGGTAATAATGGTAATAACGATAATCAGGCCATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGGCAACAGCAACCACATCCTGGATCGAACACGAACGGAAGCATAGGCGGAACTTATACGGGGTATGGAGGCAACTCATCTGTGGCAGCTGCCGGCACAGCCAATGCATCTGCTAATAATACCCCAGCCCCGAGCCGGAGTAACAGCTTCAAAAGTGCTTCAACTGGAGATGTAACAGCAGCTGGTGGTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCAATTGGATGAGGACATAATCCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACAGTGATCTTGACGATAATATGTGCTTCACATGGAAAGGTCAACTAACTTAA 2604 45.93 MASSRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSIPGPGHLNLGPVSGDGVLNNVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSLSGASLIDASSVVQHNSQQDRNAPHFPQTQPQVRQVAPGDTSLSNSQTVQTSLPMGTRVAGSLMTDTNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQQQRLRQQQQMFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPANAMKRPNDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGTDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQAATAQGLPTDRNSLSRMVAMHPGLNNQMNSQNQLIGRGTLSGSAQAALALSNYQNLLMRQNSMNSTNSNPLQQETSSSFNNSNQSPSSSFHGTAALTSGAMQNLPGSGLSSPRLPPQQSQQSQVQQLNQRPNTNNLHVQNHPQSVQGNNGNNDNQAMQHQMIQQLLQISNNSGGGQQQPHPGSNTNGSIGGTYTGYGGNSSVAAAGTANASANNTPAPSRSNSFKSASTGDVTAAGGRSSGFNQRSADLAQNLQLDEDIIQDIAHDFTENGFFNSDLDDNMCFTWKGQLT 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 62946256 62955129 + Hsped.06g12920.1 Hepe06g1292 572667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1292 867 MobiDBLite consensus disorder prediction 1 53 - -
Hepe06g1292 867 Pfam LIM-domain binding protein 297 557 IPR029005 -
Hepe06g1292 867 MobiDBLite consensus disorder prediction 1 49 - -
Hepe06g1292 867 MobiDBLite consensus disorder prediction 639 731 - -
Hepe06g1292 867 PANTHER LIM DOMAIN-BINDING PROTEIN 15 853 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Hepe06g1292 867 MobiDBLite consensus disorder prediction 131 172 - -
Hepe06g1292 867 MobiDBLite consensus disorder prediction 747 769 - -
Hepe06g1292 867 MobiDBLite consensus disorder prediction 784 820 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2754 Hepe-Chr2:76062920 Hepe06g1292 Hepe-Chr6:62946256 9.24e-103 dispersed
Hepe06g1292 Hepe-Chr6:62946256 Hepe07g0183 Hepe-Chr7:1620833 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1292 - - - 0.0