Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1313 ATGGATGTTGATGTAAAAATTCAGCCAAAGAAATCTTACATCACCTACTTTAATGGACGCATCTTTCTTGTGGGTCTTGGAGAAGGAAAAAACATGGTGAGGGGAAAAGTAGAAATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGGCGAAATGGGCTTCTAAAAAAAGCTTATGAATTATCTGTTCTTTGCGATGCTCAAGTTTCTGTCATCATTTTCTCTCAAAAAGGAAGGCTCTATGAATTCTCAAGCTCCGACATGCAAAAGTCAATCGAACGCTACAGAAAGCATGGCAAAGATGGTCAAACCAACACTTTTCGATCCGAAGGATACATGCAGCAACTGAAGCAAGAAGCTGACATGACAGCAAAGAAAGTCAAGGAACTTGAAAATTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCATTTGATGAACTCCGAGCGATAGAAAGACAGTTGGTACTCAGCTTAACCCGTATTAGAGAAAGAAAGGGCCTCAGAAGAGAAAAACTTCCAAAGGGGTACGAGCCCGAGAAGAGGTTGATCTTGCGGTGGAGCTCCCAACTAGAAGAGCTTTCGAACGAAGCGGTTGGGAGCTTCTTCATGCACCGCGGTTGGAACTCGACGCTGGAGTCGTTGTGCTTGGGCGATGCCGTAGTGGACCGACCAGCCGCTGACTGGGAAGTTTGTGGCTGA 723 44.54 MDVDVKIQPKKSYITYFNGRIFLVGLGEGKNMVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAQVSVIIFSQKGRLYEFSSSDMQKSIERYRKHGKDGQTNTFRSEGYMQQLKQEADMTAKKVKELENSQQKLLGRGLDSCSFDELRAIERQLVLSLTRIRERKGLRREKLPKGYEPEKRLILRWSSQLEELSNEAVGSFFMHRGWNSTLESLCLGDAVVDRPAADWEVCG 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 63233347 63246885 + Hsped.06g13130.1 Hepe06g1313 572688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1313 240 SUPERFAMILY SRF-like 34 111 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 CDD MADS_MEF2_like 34 109 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe06g1313 240 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 179 232 - -
Hepe06g1313 240 ProSiteProfiles K-box domain profile. 118 204 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe06g1313 240 Coils Coil 118 138 - -
Hepe06g1313 240 Gene3D Glycogen Phosphorylase B; 177 232 - -
Hepe06g1313 240 Gene3D - 44 128 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 FunFam MADS-box transcription factor MADS-MC 44 116 - -
Hepe06g1313 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe06g1313 240 Pfam K-box region 118 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe06g1313 240 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1313 240 SMART madsneu2 32 91 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1897 Hepe-Chr5:69311646 Hepe06g1313 Hepe-Chr6:63233347 5.22e-40 dispersed
Hepe06g1313 Hepe-Chr6:63233347 Hepe06g1597 Hepe-Chr6:66778398 2.58e-43 dispersed
Hepe06g1313 Hepe-Chr6:63233347 Hepe07g0203 Hepe-Chr7:1805681 1.82e-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55794 PF01486 K-box 1.60E-13 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1313 - - - 0.0