Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe06g1367 | ATGGCTCAAAATGTCCATTTTTCCATCCTCTTCATTTCTTTGTCCATTTTATTATCAATCTCCCCATCTTTCTCAAGCCCTACCAACAACAACGCCATAGAATTATGGTGCAGCCGAACGCCATATCCCGACGTCTGCAAACACTTCTTCAATGGCGAAAAATTCGACCCGAAAAAGCTCTCAGAATTCAAAAAAACCGCTCTCAAAATCGCCATGGAAAGAGCTTTATCAGCCGAAACACAAACAAAACAACACGGCCCAAAATGCCGCAGCAAAAAAGAAAAAACCGCTTGGAACGACTGTTTGGAGCTCTACCAAACCACAATCCTCCAGCTCAACAGAACCTTCTCCGACAACTACTGCTCCGATTTCGACATCCAAACATGGCTCAGCTCGGCGATGACCAATCTCGAAACTTGTCGCGCCGGGTTCGCCGACCTCGATATCAAGGACTACGACGTGGTCTTCCCGTTTCTGGCGAGGAATAATAATGTCACGAAGCTTATCAGTAATAGTTTGGCGATGAATAACTGCTCGGAGACGGAGACGGGTTATAAGGGAGGGTTTCCGAGGTGGGTTCGGGGTGGGGACCGGAGGCTGCTGCAGGCGGCGGGGGTACCGAAGGCGGACTTGGTGGTGGCGCAGGATGGGTCGGGGAGTTATAGGACGGTGCAGGCGGCGGTGGATGCGGCGGGGAAGAGGAAAGGGAGTGGGAGATATGTGATACATATAAAGAAAGGGGTTTATAAGGAGAATGTAGTGATTGGGAATAAGGTGAAAAATTTGATGCTTGTGGGAGATGGAATGAAGTATACTATTATTACTGGGAGTAAGAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTCTTGCTGTGACCGGTGAAAGTTTCATTGCCCGTGACATCACATTCCGCAACACCGCGGGACCCGAAAACCACCAAGCGGTAGCCCTACGGTCGGGCTCGGATCTCTCGGTCTTCTACCGCTGCGGCTTCGAAGGATATCAAGACACTCTCTACGTCCACTCGCAAAGACAATTCTACAGAGAATGCTACATTTACGGCACGGTCGATTTCATCTTCGGCAACGCGGCCGTGGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCTCGGGCCAGCAATGCGTCGTCACGGCCCAAGGCCGGACCGACCCAAACCAGAACACCGGGATCTCGATCCACAACTCGAGGGTGATGGCGACGGCCGACCTCACACCGGTGCTGAGCTCGGTGAGAACCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGGACGGTTTACTTGCAAAGCTTCATGGATAGGTTGGTGAATCCTGCAGGGTGGTTGGAATGGAGTGGTAATTTTGGTCTTAATACATTGTATTATGGAGAGTTCAAGAATTTTGGGCCTGGTTCTTCCACTGCTAACAGAGTGAAATGGAAGGGTTATAGAGTGATTACAAGTGCCACTGAAGCATCAAAATTTACTGTTGCTAATTTTATTGCTGGGAATTCATGGCTGCCTGGAACTGGAATTCCATTCACAGCTGGGCTTTGA | 1569 | 49.71 | MAQNVHFSILFISLSILLSISPSFSSPTNNNAIELWCSRTPYPDVCKHFFNGEKFDPKKLSEFKKTALKIAMERALSAETQTKQHGPKCRSKKEKTAWNDCLELYQTTILQLNRTFSDNYCSDFDIQTWLSSAMTNLETCRAGFADLDIKDYDVVFPFLARNNNVTKLISNSLAMNNCSETETGYKGGFPRWVRGGDRRLLQAAGVPKADLVVAQDGSGSYRTVQAAVDAAGKRKGSGRYVIHIKKGVYKENVVIGNKVKNLMLVGDGMKYTIITGSKSVGGGSTTFNSATLAVTGESFIARDITFRNTAGPENHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPISGQQCVVTAQGRTDPNQNTGISIHNSRVMATADLTPVLSSVRTYLGRPWKEYSRTVYLQSFMDRLVNPAGWLEWSGNFGLNTLYYGEFKNFGPGSSTANRVKWKGYRVITSATEASKFTVANFIAGNSWLPGTGIPFTAGL | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 63939918 | 63942880 | + | Hsped.06g13670.1 | Hepe06g1367 | 572742 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe06g1367 | 522 | PANTHER | PECTINESTERASE | 10 | 512 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Hepe06g1367 | 522 | Pfam | Plant invertase/pectin methylesterase inhibitor | 31 | 175 | IPR006501 | GO:0004857(InterPro) | |
| Hepe06g1367 | 522 | SUPERFAMILY | Pectin lyase-like | 206 | 521 | IPR011050 | - | |
| Hepe06g1367 | 522 | CDD | PMEI-like_3 | 35 | 177 | - | - | |
| Hepe06g1367 | 522 | ProSitePatterns | Pectinesterase signature 1. | 236 | 255 | IPR018040 | - | |
| Hepe06g1367 | 522 | SMART | PMEI_2 | 28 | 175 | IPR006501 | GO:0004857(InterPro) | |
| Hepe06g1367 | 522 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 28 | 178 | IPR035513 | - | |
| Hepe06g1367 | 522 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 31 | 178 | IPR035513 | - | |
| Hepe06g1367 | 522 | Pfam | Pectinesterase | 210 | 508 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Hepe06g1367 | 522 | Gene3D | - | 206 | 522 | IPR012334 | - | |
| Hepe06g1367 | 522 | ProSitePatterns | Pectinesterase signature 2. | 355 | 364 | IPR033131 | - | |
| Hepe06g1367 | 522 | FunFam | Pectinesterase | 205 | 522 | - | - | |
| Hepe06g1367 | 522 | NCBIfam | pectinesterase inhibitor domain | 6 | 177 | IPR006501 | GO:0004857(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g2634 | Hepe-Chr2:73797441 | Hepe06g1367 | Hepe-Chr6:63939918 | 1.06e-170 | dispersed | |
| Hepe03g1383 | Hepe-Chr3:70466893 | Hepe06g1367 | Hepe-Chr6:63939918 | 1.63e-155 | dispersed | |
| Hepe05g1854 | Hepe-Chr5:68844978 | Hepe06g1367 | Hepe-Chr6:63939918 | 2.57e-202 | dispersed | |
| Hepe05g1855 | Hepe-Chr5:68864463 | Hepe06g1367 | Hepe-Chr6:63939918 | 7.97e-129 | dispersed | |
| Hepe06g0790 | Hepe-Chr6:54636648 | Hepe06g1367 | Hepe-Chr6:63939918 | 2.06e-145 | dispersed | |
| Hepe06g1367 | Hepe-Chr6:63939918 | Hepe07g1125 | Hepe-Chr7:20386608 | 1.17e-185 | dispersed | |
| Hepe06g1367 | Hepe-Chr6:63939918 | Hepe07g0246 | Hepe-Chr7:2340813 | 2.89e-257 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe06g1367 | K01051 | - | csv:101216005 | 858.211 |