Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1389 ATGCCACAGATGCCACAAAGTTGCACATTTATGGAGGGGATGGAAGATGAAGCCGATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTATAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACTTCATCCCAAGGATTACTAGTGTCCCAACTCCAAATTGCGTATTCAAGCTATATGCCAATGTTGATGCAGTGGGAAATTTAATTCCGGTTTCACAAGTCCGTGAGGATGTTGCTGCGGCTTATAGGAAAGAAATCGGGTGGCAGACGAGTGAAAAGCTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAACAGATGATGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAATAACGGTCTATCCTCAAGAATATCAGCCATTGCACCTAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACGACCACCTGATATGGAGACGAACATGAGCATTAAAGATGATGTGAGTGAAGCAAGTTCTGCAAATAGCTACTCAAGCTATTCTTCTAGCTCACTTACAGATGGCAGCTCGAGCTTAATTACATCCTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATCAATCAACCTCTTGCAACGAAAACAAGCTCCATTAAATCCAACCATTCTAAATGTCAATCCGTTGATATTGAGGAGCAGGTGGATGGCGTTCGTTCTTCTTCCTATGTTTTAGATTGCGTACAAACATTGAGTCGGGCCTCTAGTTGTAAAAGCGTGCCAACAGATAACCAGTCTTGGGTTTCTAATGAAGCTTCATCCTCGGGCGCGTTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGAGGAATGTATGCAATTGCTCAACGCGAGACGATCGATGCCTCTCGAAAGCTGGGTCATCTGAATAAACAACGATCGGAGGAAGCTAGGAAGCTCGAAGAGATCAACAACAAAGAGGTGGTTGCCAAAGAATTTGTGAGGGAAGAGAGAGTGAAGCGTGAAGCTTTGAGAAGAGAAGCAAAGTATTTAAAAGAACGCGCCGAAAGAGAGGGCATGTATAGGAAGGAAGCAGAGACAAAAGCTCATCAGGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTCTTCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCGGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCAAATGGAACAGTTTATAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGGTCACAAAAAGATGCAATTTCTTCAGGAGCTCGAAATCTTGAGCAAAATCCATCATCCCCATCTACTACTACTCCTCGGTGCTTGTCCGGATAAGAATTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGCCAATACACCTGCAATCCCATGGTATGAGCGGTTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAGCCAAAACCAATAATCCACCGTGATCTTAAGCCAGCGAACATCTTACTTGACCAAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAGTTCAGACCCTTTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCCGAGTATCAACGAACCGGATTACTCTCACCTAAGTCTGATGTATATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTGGTTGAAACAGCCATTGATAACCACACTTTAATAAAGGTTCTAGACATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCGAGATTAGGACTTCGCTGTTCCGAGCTGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGACCGTCGGGCAATAGAGAAGTGGCTTCAGGAGAACGATAACTCACCAATGACGATGTTGCCACTGCCCTATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAGAAACTAA 2490 42.93 MPQMPQSCTFMEGMEDEADRNLMLLPSPSPVIAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHFIPRITSVPTPNCVFKLYANVDAVGNLIPVSQVREDVAAAYRKEIGWQTSEKLLPYKKMFAQRKVQLDVVTLETDDVANAIIEEVTKCSISKLVIGVSSQGFFSRNNGLSSRISAIAPRYCTVYAISKGKLASIRPPDMETNMSIKDDVSEASSANSYSSYSSSSLTDGSSSLITSYSHFPSPSPSLPLQRFQALSTINQPLATKTSSIKSNHSKCQSVDIEEQVDGVRSSSYVLDCVQTLSRASSCKSVPTDNQSWVSNEASSSGAFNDYSSCESQADVNFELEKLRIELRHARGMYAIAQRETIDASRKLGHLNKQRSEEARKLEEINNKEVVAKEFVREERVKREALRREAKYLKERAEREGMYRKEAETKAHQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGANGTVYKCSLHHTTVAVKVLHSRDGHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRANTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFSSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLIKVLDIEAGDWPVEETYELARLGLRCSELQRKDRPDLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEKWLQENDNSPMTMLPLPYKNLIPNYSLLSAIVEWNSRRN 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 64096367 64103588 - Hsped.06g13890.1 Hepe06g1389 572764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1389 829 SMART serkin_6 476 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1389 829 ProSiteProfiles U-box domain profile. 758 829 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1389 829 Coils Coil 377 397 - -
Hepe06g1389 829 SMART Ubox_2 762 824 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1389 829 Pfam Protein tyrosine and serine/threonine kinase 481 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g1389 829 SUPERFAMILY Protein kinase-like (PK-like) 457 732 IPR011009 -
Hepe06g1389 829 CDD RING-Ubox_WDSUB1-like 760 814 - -
Hepe06g1389 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 759 829 IPR013083 -
Hepe06g1389 829 SUPERFAMILY RING/U-box 747 827 - -
Hepe06g1389 829 Coils Coil 349 369 - -
Hepe06g1389 829 ProSitePatterns Protein kinases ATP-binding region signature. 482 503 IPR017441 GO:0005524(InterPro)
Hepe06g1389 829 Gene3D Transferase(Phosphotransferase) domain 1 549 758 - -
Hepe06g1389 829 PANTHER OS02G0152300 PROTEIN 33 821 IPR051348 -
Hepe06g1389 829 MobiDBLite consensus disorder prediction 430 452 - -
Hepe06g1389 829 ProSiteProfiles Protein kinase domain profile. 476 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1389 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g1389 829 Gene3D Phosphorylase Kinase; domain 1 445 548 - -
Hepe06g1389 829 CDD STK_N 31 194 - -
Hepe06g1389 829 Coils Coil 405 425 - -
Hepe06g1389 829 Pfam U-box domain 759 826 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1389 Hepe-Chr6:64096367 Hepe10g0326 Hepe-Chr10:3479889 5.55e-113 dispersed
Hepe06g1389 Hepe-Chr6:64096367 Hepe08g2676 Hepe-Chr8:68800887 8.66e-120 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007149 1 0 1 0 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 0 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72883 PF07714 PK_Tyr_Ser-Thr 4.30E-40 CL0016 Hepe PK