Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1401 ATGGAAGCGGCCGGAGGAACTGCTGCTGGTGGTGGATCGGGATCGGGATTGAAGAAATTGCCTCGATCTCAATCACCGTCGCAATTATTTGGAGTTTCGCCGGAGATTACTGTCGACGCTACCGATTCTCAGCAAGTCGAAGCTGCGTCGCCGATTAGTAGCCGACCTCCCGCTTCGTCTTCGTTGAACTACGAGGAACTCATTCGTCTCTCCGGCGGTGGAAGTCAGATGGCAGTCGACGACGACGAAGCCGACCGAGGAGGCGGCGGCGGTAATCGGTGGCCGCGGCAAGAAACTTTAGCGCTGCTGAAAATTAGGTCAGAGATGGATTCAGCGTTTCGCGATGCTACACTTAAAGGACCTCTCTGGGATGAAGTCTCCAGGAAGCTAGCGGAATTGGGTTACAATAGAAGTGCAAAAAAATGCAAAGAAAAATTTGAGAATGTTCAGAAATATTACAAGCGAACAAAAGAAGGGCGAGGAGGTCGTCAAGATGGCAAAACTTACAAATTCTTCACACAACTTGAGGCTCTTCACAATGCCAACGCCGCCACCGCCACCGCCACCGCCGCCGTCGCTGCAACAGCAACTTCAAACGTGGCGCCGTCTTCTTTTAATTCAGCGCCCACTCCCATGTCTGTTAACTTTGGGATCAGCAACCCAACGCCAATCTCATCCGTCAAAATCTCCCCCACTACCATTTCTTCACAAACCCCAATCGGAGGAATCTTTTCTCCTTCAGACCATTTCACCGTCCGGCCGCCACCTCCCGTCGCCGCCCCAATGGGTGTCAGCTTTTCGTCGAACACCTCATCTGCATCCACTGACGACGACGACGAGATGGGAAGTGGGTTTGATGTGGCGGGAACCAGCCGGAAGCGGCGGAGGGCGACGGAGGAGGAGGAGGAGGATCAGGAGAAGGGAAGTGGGAAAAGCCACAAGATGATGATGGAGTTTTTCGAGGGATTGATGAAGGAAGTGATGAAGAAACAGGAAGTTATGCAACAGAAGTTTTTAGAAGCGATTGAGAAGAGAGAAGAAGATAGGATGATTAGAGAAGAGACGTGGAAAAATCAAGAAATGGGTAGATTGAATCTTGAGCAACAAAGAATGGCTCAAGAACGAACAATCTCTGCTTCTAGAGATGCTGCTATAATTGCTTTTCTCCAGAAATTTACTGGCCAAACCATTCAATTACCAGCAGTGAATAATGTGAATATTTCAGTGCCTTTATCTGTACCTATGCCTGCAGCTGCAGCTGCAGCTACACCTGCGCCGGCGCCCGTGCCAGTGTCGGTGTCAGTGTTAGTGCCATCACGGCCACTATCTCCTGTCCCCCATCCGCCATTACAACACACAAATCAAAACCAAATTCAGACTCAGATTCAGAATCAGGTTATTCCATATCAAGAAATTACCCAAGGGGGAGATATTGGGGGTTCTAATTCAGAACCCAATATTTCATCATCAAGATGGCCAAAACCAGAGGTTTTAGCTCTGATCAAGATCAGAGGTGGGCTTGAATCCAAGTATCAAGAGACGGGTCCGAAGGGTCCGTTGTGGGAAGACATTTCGAATGCGATGCAGCAGATGGGTTACAAGAGGAGTTCCAAGAGATGCAAGGAGAAATGGGAGAATATCAATAAGTACTTCAAGAAGGTGAAAGAAAGCAACAAGAAACGCCGGGAGGATTCCAAAACCTGCCCTTATTTCGATGAACTCGACGCGCTTCACCGGAGAAAGATTATTCTCGGTGGCGGTTCTGATGGCGGCGGTGGCGGTGGCGGTGGAAGTTCGTTTAGCGACACCACCAAAATTGAGCAGGATCACCCATCAACAGTGATTATTACTCCACAACCTCAATCTCAAACGACCACACTTGCTGAAGGTTTGTCTGTGAATCTCTTTGGTGAAGGAACTGATCAAGAACCACCAGCAACACTCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGATCACCTTTATCGACCTGGTAGCAACGCTAACGTCGATCAAGACGACGACGGCGAAGACGAAGAAGACTATTGCAGTGATGATGATGATATACCAGAAGAAAAGAGGAACAATCTCGATTATAAAATCGAGTTTCAGAGACGAAATGTCGGAAACTCCAATGGCGTTGGGAGTGAGTTTCAATCAATGGCAGTGGTTCAATAG 2190 48.72 MEAAGGTAAGGGSGSGLKKLPRSQSPSQLFGVSPEITVDATDSQQVEAASPISSRPPASSSLNYEELIRLSGGGSQMAVDDDEADRGGGGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLAELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANAATATATAAVAATATSNVAPSSFNSAPTPMSVNFGISNPTPISSVKISPTTISSQTPIGGIFSPSDHFTVRPPPPVAAPMGVSFSSNTSSASTDDDDEMGSGFDVAGTSRKRRRATEEEEEDQEKGSGKSHKMMMEFFEGLMKEVMKKQEVMQQKFLEAIEKREEDRMIREETWKNQEMGRLNLEQQRMAQERTISASRDAAIIAFLQKFTGQTIQLPAVNNVNISVPLSVPMPAAAAAATPAPAPVPVSVSVLVPSRPLSPVPHPPLQHTNQNQIQTQIQNQVIPYQEITQGGDIGGSNSEPNISSSRWPKPEVLALIKIRGGLESKYQETGPKGPLWEDISNAMQQMGYKRSSKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALHRRKIILGGGSDGGGGGGGGSSFSDTTKIEQDHPSTVIITPQPQSQTTTLAEGLSVNLFGEGTDQEPPATLTKPEDIVNELMELQDHLYRPGSNANVDQDDDGEDEEDYCSDDDDIPEEKRNNLDYKIEFQRRNVGNSNGVGSEFQSMAVVQ 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 64251143 64255096 - Hsped.06g14010.1 Hepe06g1401 572776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1401 729 CDD GT1 490 555 - -
Hepe06g1401 729 PANTHER FI21293P1 66 611 - -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 1 95 - -
Hepe06g1401 729 CDD GT1 92 157 - -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 675 691 - -
Hepe06g1401 729 SMART sant 488 550 IPR001005 -
Hepe06g1401 729 SMART sant 90 152 IPR001005 -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 664 699 - -
Hepe06g1401 729 Pfam Myb/SANT-like DNA-binding domain 92 178 IPR044822 -
Hepe06g1401 729 Pfam Myb/SANT-like DNA-binding domain 490 577 IPR044822 -
Hepe06g1401 729 Gene3D - 492 553 - -
Hepe06g1401 729 Gene3D - 94 155 - -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 263 278 - -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 18 66 - -
Hepe06g1401 729 ProSiteProfiles Myb-like domain profile. 484 548 IPR001005 -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 248 312 - -
Hepe06g1401 729 ProSiteProfiles Myb-like domain profile. 92 150 IPR001005 -
Hepe06g1401 729 FunFam Trihelix transcription factor GT-2 94 155 - -
Hepe06g1401 729 MobiDBLite consensus disorder prediction 289 312 - -
Hepe06g1401 729 FunFam Trihelix transcription factor GT-2 492 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1401 Hepe-Chr6:64251143 Hepe10g1966 Hepe-Chr10:56627531 2.22e-101 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55798 PF13837 Myb_DNA-bind_4 1.10E-22 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1401 - - - 0.0