Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1415 ATGACCCTTTTCAAAATGTTGGATTGCCATTCAAATGATGTAAAGGTCAAAACCAATGCCAATCAGAACAATGAATCTGACCTTGAGAAGCAGAGAGTTGCTCAGCCATCAGCATCAGTGCCCTCTACCAGTGATGCTGATGCTGATGCTGCTGATGATACACCATTGACAATTGTTGTTTCTAATGGGGAGCCCAAATCAATCTCTGAGGTTCATGGGATTCCTCAAGAGGAATTATTGCCTTGTGTAGTTTCCCTTTCCCCCAAAAAGGATCTCTTGTCTACAACTTCTAGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGAACTTGCATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCTGCAAATGTATCACCTCCACAATCACATCATAGTACCAGCTACTGGATTTGGAGGATTGATCCAACCTACAGAACCCAAGATCCTGAAAGGCAGCATTGCTTCAGTCCACTTTGGCTGGCTTTTGCCATCCTCATAGGGGGTCTGCTACTGGATATTCTTATATCCATCACCCTTGGCGTTTCGGCATTGCCCGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTAGACTTGCCCTGGAGTTCTTTCAGGAATGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG 795 43.52 MTLFKMLDCHSNDVKVKTNANQNNESDLEKQRVAQPSASVPSTSDADADAADDTPLTIVVSNGEPKSISEVHGIPQEELLPCVVSLSPKKDLLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHSTSYWIWRIDPTYRTQDPERQHCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 64540349 64544486 - Hsped.06g14150.1 Hepe06g1415 572790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1415 264 Pfam RING-variant domain 103 148 IPR011016 GO:0008270(InterPro)
Hepe06g1415 264 SUPERFAMILY RING/U-box 98 151 - -
Hepe06g1415 264 SMART ringv_2 102 149 IPR011016 GO:0008270(InterPro)
Hepe06g1415 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 157 IPR013083 -
Hepe06g1415 264 ProSiteProfiles Zinc finger RING-CH-type profile. 95 155 IPR011016 GO:0008270(InterPro)
Hepe06g1415 264 MobiDBLite consensus disorder prediction 16 44 - -
Hepe06g1415 264 PANTHER ZINC FINGER, RING-CH-TYPE 27 239 - -
Hepe06g1415 264 CDD RING_CH-C4HC3_MARCH 103 149 - -
Hepe06g1415 264 MobiDBLite consensus disorder prediction 16 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1415 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42