Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1450 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGAGAAGCACTTGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAAATTAGACCACAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAACTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCTTAAGAAACATTCCTGTTGGTGGAGGTTCAAGGAAGAACAAAAGACCTTCTTCTTCTACTCCTCCTCTTCCAAACAAAATTCTTGATCTCCCACAAAACCCTAAAACCACTCATTCTCAAGATCTCAATTTGTCCTTCCCACCACCCTCTCATCATCAAGATCATCATCATTTCACCTCCAATAATCTCTCTCAAATCGTTGTCGGTGGTAACCCGATCGCTACCTCTGGCTCTGCTTCGACGACGATGGCACCGTCGTCGTCGTCGTCGCATCATCAGCTTTCGGCGATGGAGCTTCTCACCGGGATGTCGAGCAATTCTAGGGGTTTGAATTGTTTCATTCCAATGCCGTCTATCGTTCCGGATCCTGGCTCGGTTTACACGACGGGGTTTCCCGATCTCCATGATCAGTTCAAGTCGAGCCTTGGATTCTCACTCGATGGCTACGGCGGCGTCCCGAACGAGGCTAGCAATGGCGGGGGGAGGCTTATGCAGCTGCAATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGAGCAAGGGAAAGAGCAAGGAGATTCAACTGGGTATTGGAGTGGGATGTTGGGTGGAGGATCATGGTAA 849 46.05 MDTAQWPQEIVVKPIEEIVRSTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSTPPLPNKILDLPQNPKTTHSQDLNLSFPPPSHHQDHHHFTSNNLSQIVVGGNPIATSGSASTTMAPSSSSSHHQLSAMELLTGMSSNSRGLNCFIPMPSIVPDPGSVYTTGFPDLHDQFKSSLGFSLDGYGGVPNEASNGGGRLMQLQFEDLKQGSNGVEQGKEQGDSTGYWSGMLGGGSW 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65065085 65067232 - Hsped.06g14500.1 Hepe06g1450 572825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1450 282 MobiDBLite consensus disorder prediction 84 139 - -
Hepe06g1450 282 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g1450 282 MobiDBLite consensus disorder prediction 151 171 - -
Hepe06g1450 282 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g1450 282 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g1450 282 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 173 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1450 282 MobiDBLite consensus disorder prediction 94 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1450 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2037 Hepe-Chr5:70899015 Hepe06g1450 Hepe-Chr6:65065085 5.03e-35 dispersed
Hepe06g1450 Hepe-Chr6:65065085 Hepe07g2228 Hepe-Chr7:66682904 8.86e-37 dispersed
Hepe02g2774 Hepe-Chr2:76336509 Hepe06g1450 Hepe-Chr6:65065085 3.38e-32 transposed
Hepe05g0445 Hepe-Chr5:5787606 Hepe06g1450 Hepe-Chr6:65065085 4.71e-38 transposed
Hepe06g0810 Hepe-Chr6:54910939 Hepe06g1450 Hepe-Chr6:65065085 4.27e-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1473 . 12 153 C2C2-Dof Transcription Factor Family AT1G51700 55.3 3.0e-37 152.1
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT1G29160 68.8 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT2G34140 64.3 9.8e-40 160.2
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-38 156.0
Hepe05g0180 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.5e-41 165.6
Hepe02g3032 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 64.7 1.4e-37 154.1
Hepe06g1450 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 78.8 5.0e-43 172.2
Hepe08g0797 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 57.7 1.9e-38 157.1
Hepe10g1221 . 57 138 C2C2-Dof Transcription Factor Family AT5G02460 85.4 4.3e-38 156.0
Hepe04g0864 . 34 126 C2C2-Dof Transcription Factor Family AT3G55370 72.3 1.3e-36 151.0
Hepe09g0293 . 24 327 C2C2-Dof Transcription Factor Family AT5G60850 50.5 2.2e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55802 PF02701 zf-Dof 3.90E-33 No_clan Hepe TF