Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1463 ATGACTTTTCATGGAGGAAATTCGTATACGCAGTCATGTGTTTCGGTCCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGGTGAAAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGCCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCAGAATCAAATCAAAATGAGCCTAACAGTCTAGATCCATGTCCTCCTCAACCAGCTAGACCAGTTGTTGATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACCAGCACTCACGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTCTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTCCATGGATACGAGTGGCGATTCAAGCATATTTTCAGGGGTCAGCCACGAAGGCACCTGCTAACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACACTGGAGACTTGCGTGTTGGGGTGAGGCGTCGTGCTCGGCAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACACGCTTTGTAGTCTATTATAAACCCAGGACTTGTCAGTTCATAATAAGTCTCAATAAATACTTGGAAGCAGTCAAAAACAGCTTTTCTGTTGGAATGAGATTTAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAACTGGAGCTGGAGATATTTCACCTCATTGGTCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTCTAAGACCTGACAGGGTATCGCCTTGGGATGTAGAACCACTCACGTCTTCAGCAGTCACAAGTCTATCTCAACCCGTTTCAAAAAACAAAAGGCCTCGACAACCAACTGAAACTCCAGCTCTTGATGGTGCTGATTTGACTAAGCCATCACATAGGGATTCTGGATTGACACAGTCTCATGATGCTAAACAGTGCAGTAATGCAGCTGAAATCAGAAAAGGTGAAACCAATGAATTGTGTCATCATAGAGAGACAGATGCTATCAGCAACAGCACATGTGTATCAAGAACACAGACTGAAGGGACCTGGCTATCTTCTACCCAATCCAATAGTTATAAACACCCAGTAAACGACATGGCACAGGATTATAAAACTGTCCTTGGCTGTGGTTGGTCTTTTCTGTCAGGACCTCCAACCTCTCAATTGGTCAAGTTAAGTGATGATCAAATACTTGATCCCACTGAAAATGGGAGGAAAGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAACATCTTCTCAACCAAACAGTGTGTGTAGCGACACAGACGGGCGCATCAGTACCTTGTCAATGGCTCAGTCCGATTCAAAATCTGACAACTTGGAGGTCTCCATAGAAAGAAAATCAGAACCATTACAAGCATCTCTGAAGGAGACTCAAAGCAATCACAGTAACTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGCGCTCGAGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTTTGTAACATGGTGAAAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCGAGCAGCTGATGTCAGTAGAAGTTGAAGGGGCTGTAGTAATCCCCGACTCCCCTGCAATTTGA 2094 44.41 MTFHGGNSYTQSCVSVQGCGRDDLYMELWRACAGPLVDVPRVGERVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPNSLDPCPPQPARPVVDSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDTGDLRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVKNSFSVGMRFNMSFEGEDSPERRFSGTITGAGDISPHWSNSSWRSLRVQWDEQTSILRPDRVSPWDVEPLTSSAVTSLSQPVSKNKRPRQPTETPALDGADLTKPSHRDSGLTQSHDAKQCSNAAEIRKGETNELCHHRETDAISNSTCVSRTQTEGTWLSSTQSNSYKHPVNDMAQDYKTVLGCGWSFLSGPPTSQLVKLSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKTSSQPNSVCSDTDGRISTLSMAQSDSKSDNLEVSIERKSEPLQASLKETQSNHSNSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVKRIFICSREQVKKMSSGSEQLMSVEVEGAVVIPDSPAI 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65217889 65225456 + Hsped.06g14630.1 Hepe06g1463 572838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1463 697 FunFam Auxin response factor 290 361 - -
Hepe06g1463 697 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
Hepe06g1463 697 ProSiteProfiles PB1 domain profile. 586 667 IPR053793 -
Hepe06g1463 697 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Hepe06g1463 697 MobiDBLite consensus disorder prediction 360 408 - -
Hepe06g1463 697 Gene3D - 290 363 - -
Hepe06g1463 697 MobiDBLite consensus disorder prediction 360 377 - -
Hepe06g1463 697 Gene3D - 126 231 IPR015300 -
Hepe06g1463 697 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe06g1463 697 Gene3D - 581 674 - -
Hepe06g1463 697 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Hepe06g1463 697 SUPERFAMILY CAD & PB1 domains 577 662 - -
Hepe06g1463 697 SUPERFAMILY DNA-binding pseudobarrel domain 125 258 IPR015300 -
Hepe06g1463 697 CDD B3_DNA 128 229 IPR003340 GO:0003677(InterPro)
Hepe06g1463 697 FunFam Auxin response factor 581 674 - -
Hepe06g1463 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 675 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe06g1463 697 FunFam Auxin response factor 127 231 - -
Hepe06g1463 697 Pfam AUX/IAA family 573 622 IPR033389 -
Hepe06g1463 697 Pfam AUX/IAA family 632 664 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1463 Hepe-Chr6:65217889 Hepe07g0830 Hepe-Chr7:10325207 7.38e-283 dispersed
Hepe06g1463 Hepe-Chr6:65217889 Hepe08g0874 Hepe-Chr8:7925941 9.77e-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55805 PF02309 AUX_IAA 5.50E-13 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1463 K14486 - csv:101209208 1229.93