Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1498 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTTTCGTTCTGGGGTTGGTATTTTCGCCGAGCTATGGCGACCCAGTTGAAGATAAGGGAGCTTTGCTTGATTTTGTGAAGAATCTCCCTCATTCTCGCGCTCTTAATTGGAATGCGGATTCCCCAGTTTGTCATTACTGGACTGGTATAACTTGCAGTGAAGATGAATCTCGTGTTATAGCCGTTCGGTTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCACGGCGCTGCAAATATTGAGTCTCAGATCCAACCGTATAACGGGGGATTTCCCTTCTGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAGCTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTCACCTTTGTGAACCTCTCTAACAATGGCTTCAATGGCAGCATTCCTTCTTCGCTTTCTAATCTGACAGCCCTCACGGGTTTGAACCTTGCAAATAACTCTCTCTCAGGAGAAATACCTGACCTCCAAATGCCCAAATTGCAGTTTCTGAATTTGTCTAACAACAATTTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAATGACATATTCTTTGAGAGTTCTTTACCAAACAATCCTCCCGTGCCCCCGCCGTTGCCTGTGTTGATCGAAAAACCAAAGAATGCTGGTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTTTAGCATTTGGCTTTCTGATGCTTGTTTGTTTCTCAAGAAGGAAGAGGGAAGAATATTCTGGGGATCTGCAGAAAGGCGGAATGTCGCCCGAGAAGGTGATATCGAGGACTCAAGATGCAAACAACAGATTGGTCTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCGTATAAAGCAATTCTAGAGGATGCCACCATAGTTGTTGTTAAGAGGTTGAAGGAAGTAAGCGCTGGGAAACGCGATTTCGAACAGCAAATGGAGATTGTTGGCAGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCCTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTATAGTCAGGGAAGCGTCTCGGCTATGTTACACGGTAAACGTGGAGAGGAAAAAACCCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCTGTGTCCATGCCGAAAATGGAGGGAAGCTCGTCCATGGAAATGTGAAGTCCTCAAACATCTTTCTGAACTCTCAACAGTTTGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTCTCTCCACCTATATCCCGTGCTGCTGGTTACCGAGCCCCGGAAGTGACAGACACCCGCAAGGCGACACAGGCTTCAGATGTTTTCAGCTTTGGCGTGGTACTCCTCGAGCTTCTAACCGGAAAGTCTCCAATACACGCAACAGGCGGCGAGGAGATCGTCCACTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAGATAGCCTTATCATGTGTGGCCAGGATAGCAGATCAGAGGCCGAAAATGGCGGAAATTGTGAAGATGATCGAAAACGTTCGACCGATGGAAGCCGAGAATCGTCCTTCTTCCACGAACCGATCTGAAAGTTCAATGCAGCTAGCTGTTGGGACTGAAAATTCAACCTCTCAGTGA 1887 46.58 MEALWIFSFVFVLGLVFSPSYGDPVEDKGALLDFVKNLPHSRALNWNADSPVCHYWTGITCSEDESRVIAVRLPGVGFHGPIPANTLSRLTALQILSLRSNRITGDFPSDFSNLSNLSYLYLQFNSFSGPLPSNFSVWKNLTFVNLSNNGFNGSIPSSLSNLTALTGLNLANNSLSGEIPDLQMPKLQFLNLSNNNLSGSVPKSLQRFPRSVFVGNDIFFESSLPNNPPVPPPLPVLIEKPKNAGGGLGEAALLGIIIAGGILGLLAFGFLMLVCFSRRKREEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATIVVVKRLKEVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFYSQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIACVHAENGGKLVHGNVKSSNIFLNSQQFGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIADQRPKMAEIVKMIENVRPMEAENRPSSTNRSESSMQLAVGTENSTSQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65559262 65563091 - Hsped.06g14980.1 Hepe06g1498 572873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1498 628 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g1498 628 Gene3D Ribonuclease Inhibitor 25 217 IPR032675 -
Hepe06g1498 628 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Hepe06g1498 628 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Hepe06g1498 628 SUPERFAMILY L domain-like 38 208 - -
Hepe06g1498 628 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Hepe06g1498 628 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Hepe06g1498 628 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Hepe06g1498 628 MobiDBLite consensus disorder prediction 601 628 - -
Hepe06g1498 628 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Hepe06g1498 628 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Hepe06g1498 628 MobiDBLite consensus disorder prediction 602 628 - -
Hepe06g1498 628 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Hepe06g1498 628 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515(InterPro)
Hepe06g1498 628 FunFam pollen receptor-like kinase 1 295 400 - -
Hepe06g1498 628 Gene3D Transferase(Phosphotransferase) domain 1 402 622 - -
Hepe06g1498 628 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1498 628 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Hepe06g1498 628 PANTHER OS05G0588300 PROTEIN 8 610 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1498 Hepe-Chr6:65559262 Hepe08g0676 Hepe-Chr8:6049883 3.00e-154 dispersed
Hepe06g0764 Hepe-Chr6:54192525 Hepe06g1498 Hepe-Chr6:65559262 1.52e-177 wgd
Hepe06g1498 Hepe-Chr6:65559262 Hepe07g0100 Hepe-Chr7:950420 7.04e-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72887 PF00069 Pkinase 1.70E-34 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1498 - - - 0.0