Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1517 ATGGCTACTAAAGAGTCGAGTTCTGCGACTGCCACTGAGGGCAAGATTAAAGGGGCTCTCACGCATGGCGGCCGATATGTTCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGGGCTTATGGGCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATTGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTATCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATTCGGCCGCCAAAAAAAGAGGTTTTTAATGATGTGTACATTGTTTATGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACAACTGACAGATGATCATTGCCAGTACTTTATGTATCAGTTATTGCGTGGGCTTAAATATGTACATTCAGCTAAGGTCCTGCACCGTGATCTCAAGCCCAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACAACTTCTGAAACCGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAATTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCGGGAAAAGATTATGTTCATCAACTCAGACTTATAACCGAGCTACTAGGATCACCAGATGATGCCAGCCTAGGATTTCTCCGAAGCGATAATGCTCGAAGATATGTCAAGCAGCTCCCACAGTACAGGAAACAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCCTGGATCTTCTAGAAAAGATGCTTGTATTTGATCCCAACAAACGCATTACAGTGGAGGAGGCACTTTGTCACCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCGGTCTGTTCCAGGCCTTTCAATTTTGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTCAGGTTCAATCCCGATGAATCAGCCAGGAGGACGACTCTTTGCGTCTGA 1152 43.4 MATKESSSATATEGKIKGALTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLIHMEHENIIAIRDIIRPPKKEVFNDVYIVYELMDTDLHQIIRSDQQLTDDHCQYFMYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCSRPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65829602 65834153 + Hsped.06g15170.1 Hepe06g1517 572892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1517 383 FunFam Mitogen-activated protein kinase 28 137 - -
Hepe06g1517 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Hepe06g1517 383 SMART serkin_6 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1517 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1517 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1517 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Hepe06g1517 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Hepe06g1517 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1517 383 FunFam Mitogen-activated protein kinase 127 356 - -
Hepe06g1517 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g1517 383 CDD STKc_TEY_MAPK 36 372 - -
Hepe06g1517 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524(InterPro)
Hepe06g1517 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 365 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1517 Hepe-Chr6:65829602 Hepe10g1137 Hepe-Chr10:45175894 9.73e-209 dispersed
Hepe03g0587 Hepe-Chr3:11545324 Hepe06g1517 Hepe-Chr6:65829602 2.74e-231 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72888 PF00069 Pkinase 1.70E-71 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1517 K20600 - csv:101214254 767.303