Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1521 ATGGCTCGAGAGCTTTGTGAAGGAGAGGAAAAATCAAACGAGATGGTAGTTGGAGGAGGAGGAGGAGGAGGAGGATTTTATTACAATTCGAACAACATTCAAAGCCAATTCACGAACCAGATCCAAACCGGGTTTGGATCCGCCACCGAACCGGCGGCGATGTTCAATTTGGGGATGAACAACAACCACCACCACCACGAGTCAACCGGTGGCGATGAGTTTGATCATCAGAACATGATGGTGGTTGGGCCGTGGGGGACGACGACGACGGCGGCGCAAGATGATTCCTCTTTGAGATGTGTGTTTCCATGTGAACCAAATGAAAGGCCAAGCCAAGGACTTTCTTTGTCTCTTAGTTCATCAAATCCTTCTTCTATTGGCTTACAATCTTTCGAACTCCGACCCCAAAATCAACACTCATCTAATTTGGCCATTTTTCATCTTAGAAATTCGAGGTTTTTGACACCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATCATAATAACAACCAAGCTCCTCATTGTTCTTCTTCTTCACCAAAACACAAAGGAACAACCAATAGATCATCACTCAAACAATGGGAATTGGAAGATGGCTCTTCTTCTACCAACTTCCCTCTTCAATCACTTGATTTCATCCAATTGCAAAAGAGAAAAACCAAGCTTTTTTCCATGCTTGAAGAGGTGGAGAGAAGGTACAGGCATTACTGCGAGCAAATGAAGGGGGTGGTGGCGGCATTTGAGGCGGTGGCCGGAGGAGGGGCGGCGAGGGTGTACTCGGCGTTGGCTTCGAAGGCGATGTCGAGGCATTTTCGGTGCCTTAAAGATGGGATATTGGGGCAAATTGAGGCAACAAAGAAAGCAATGGGAGAAAAGGATACAATTGCAATTGCGCCTGGTACTACAAGAGGAGAAACTCCAAGGCTTAGAGTGATCGATCAGGCTTTGAGGCAACAAAGAGCTTTTCATCAAATTACTTTGATGGAAAGCCATCCTTGGCGCCCTCAACGCGGCCTTCCTGAACGTTCTGTTTCTGTTCTTCGAGCTTGGCTATTCGAACACTTTCTTCACCCGTACCCTAGCGATGTTGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCCAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGTTGTGGAAGCCAATGGTGGAGGAGATGTATTTAGAAGAAACAAAGGAACGAGAAGAAGAGATTATTAATGCCAATAATTTCAACAACACTGCCAACAACTCTTTAGATGGGGCTGCGGATTTCGACGACGAAATCGATGGTCATCATCGGTCGTCGATCCCAACACGATTGGAGGATCAGAAGCCGACACCGGACCAACTCCTGAGAATAGACTCGGAATGTCTCTCTTCGATCATCTCTAGTAATAATTCGGAAAAGGACGATTCGAGAACCATGAAAGCCATGCAAAACCATCACCACCACCACCACCTCCACAACAATCACACCCACACCTTCGGGCGAGTGGCTGCCGATGCATTCGGCACGGTGGAGCTCGACTTCTCGGCGTACAACCACCACTCCGGTAGTGGTGGAGTTTCATACCCTAGCAACAACAATCAACACTTCAACAACGGTGGCGGTGGCGGCGTGTCGTTGACATTAGGGTTACAGCAGCATGCAGCAGCCGGTGGGAACGGCAGCGGAGGAGTGAGCATCGCCTTCTCGCCGGTGGCGGCGGCACAAAGCTCCCTCTTCTTCACAAGAGATAATCAGATGGAAGAATGCCAACCAGTTCAATATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAATTTGATGGGTGCTCAATTGCTGCATGACTTGGCCGGATAA 1884 47.72 MARELCEGEEKSNEMVVGGGGGGGGFYYNSNNIQSQFTNQIQTGFGSATEPAAMFNLGMNNNHHHHESTGGDEFDHQNMMVVGPWGTTTTAAQDDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRPQNQHSSNLAIFHLRNSRFLTPTQELLYEFCSLGITNHNNNQAPHCSSSSPKHKGTTNRSSLKQWELEDGSSSTNFPLQSLDFIQLQKRKTKLFSMLEEVERRYRHYCEQMKGVVAAFEAVAGGGAARVYSALASKAMSRHFRCLKDGILGQIEATKKAMGEKDTIAIAPGTTRGETPRLRVIDQALRQQRAFHQITLMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEREEEIINANNFNNTANNSLDGAADFDDEIDGHHRSSIPTRLEDQKPTPDQLLRIDSECLSSIISSNNSEKDDSRTMKAMQNHHHHHHLHNNHTHTFGRVAADAFGTVELDFSAYNHHSGSGGVSYPSNNNQHFNNGGGGGVSLTLGLQQHAAAGGNGSGGVSIAFSPVAAAQSSLFFTRDNQMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65873042 65877731 - Hsped.06g15210.1 Hepe06g1521 572896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1521 627 MobiDBLite consensus disorder prediction 436 459 - -
Hepe06g1521 627 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 433 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe06g1521 627 MobiDBLite consensus disorder prediction 474 500 - -
Hepe06g1521 627 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g1521 627 Gene3D - 341 403 - -
Hepe06g1521 627 CDD homeodomain 338 399 IPR001356 GO:0003677(InterPro)
Hepe06g1521 627 SMART HOX_1 338 402 IPR001356 GO:0003677(InterPro)
Hepe06g1521 627 SUPERFAMILY Homeodomain-like 339 404 IPR009057 -
Hepe06g1521 627 SMART prehox3 142 285 IPR006563 -
Hepe06g1521 627 Pfam Associated with HOX 148 283 IPR006563 -
Hepe06g1521 627 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677(InterPro)
Hepe06g1521 627 FunFam BEL1-like homeodomain protein 4 341 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1521 Hepe-Chr6:65873042 Hepe10g0889 Hepe-Chr10:24538469 3.15e-88 dispersed
Hepe06g1521 Hepe-Chr6:65873042 HepeContig66g0009 Hepe-ChrContig66:2695455 2.65e-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55810 PF07526 POX 3.40E-43 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1521 - - - 0.0