Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe06g1524 | ATGGGCTTCCCTGCAACCTACACCGACCTTCTTCTCCCAAACCTCTTCATCCACCTTCTCTCCTTCCTCGGCTTCCTCCGTAAGCTCATCTCCCTCCTCTTCCGCCTCCTCGGCCTCCAAGATTTCCTCGAACCGGACATTCCCTGGCCCCACCACTCCGATTCCTTCCCCACCGGCCCATTGACGGACCTCGACCCCCTCTCCGCCGCCCTTCTCCGCGAGATTCTCCCCGTCGTGAAGTTCTCCGACCTTCTCGACCCACCCGACAGTTGCGCCGTCTGCCTCTACGAGTTCGAATCCGACGACGAGATCCGCCGCCTCGCCAACTGCCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGCTACGGGCAGAGGACCTGCCCGCTGTGCCGGACGGTGTTTATTCCGGCCGATTTGCGGAGCGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTGGAACCACTACTGCTACACAGCGCTGGTTTGTAG | 513 | 60.43 | MGFPATYTDLLLPNLFIHLLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPHHSDSFPTGPLTDLDPLSAALLREILPVVKFSDLLDPPDSCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRSGGCNFDDRLWEDSEILEPLLLHSAGL | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 65926316 | 65926979 | + | Hsped.06g15240.1 | Hepe06g1524 | 572899 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe06g1524 | 170 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 8 | 140 | - | - | |
| Hepe06g1524 | 170 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Hepe06g1524 | 170 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Hepe06g1524 | 170 | SUPERFAMILY | RING/U-box | 76 | 139 | - | - | |
| Hepe06g1524 | 170 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Hepe06g1524 | 170 | Pfam | Ring finger domain | 89 | 134 | IPR001841 | - | |
| Hepe06g1524 | 170 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe06g1524 | Hepe-Chr6:65926316 | Hepe01g0626 | Hepe-Chr1:68078508 | 3.19e-07 | dispersed | |
| Hepe04g0661 | Hepe-Chr4:60008552 | Hepe06g1524 | Hepe-Chr6:65926316 | 1.23e-06 | transposed | |
| Hepe04g1594 | Hepe-Chr4:71415546 | Hepe06g1524 | Hepe-Chr6:65926316 | 2.97e-14 | transposed | |
| Hepe03g0577 | Hepe-Chr3:11369784 | Hepe06g1524 | Hepe-Chr6:65926316 | 4.46e-54 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe06g1524 | K16281 | - | csv:101215533 | 304.679 |