Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1526 ATGTTGAATCTATTAAATCGGCGAACAGCCGAAGCGCGAAGCCAAGGCAGTTCATTTGATAGTCGGTTCGGTATTACTCTCTCCTCCGGATTCCCTTTCATCACTATCTTCCGGCGAAAATCAACCCCATCCGATCACACAGCAATCTGTGCATCTCATTTTGAAGCTATGGGACATGGTGACAAAGGAAGACCGGGCAAAAGACCTAAATTCAACAAGGAGGATTATAAAAAAGCTGGTTTGGAAGACGACGAGGTCTATCATCTCGATGACTTCGACGATGATGATCGTCATGGTGATAAAGAAGCAAAGAGAGATTTCAGCAAATTGGAGTTAAAACCTGACCATACTAATCGGCCTTTATGGGCTTGTGCTGATGGTCGCATATTCCTTGAAACTTTCTCCCCCTTGTATAAACAAGCTTATGATTTTCTTATTGCCATCGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTTTGGAGACGGAAACAATTATCGCTGTTCTGGGTAAGTTGTCAAAGGCCAAACTCCCCAAAGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTGCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTCAAGGACGAGGTTATAGGCAGAGCTAGAATCATTCCAGAGGATTTTCGTGGAGATGGTGAATTTACAATTAGCAAAACAGCGAGTGAACTTACCAATCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCCGAGGATAGAGAAACTCATTCATTTGAAATTGATTCAGCACAAGTTGAAAATGTTAAACAACGCTGCTTGCCTAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAGCCCCAGGCTCAACCAAGGCCGTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGAAAGTCTCTGGTTGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGCTGTCTATGTTTAGCTACCAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGGGATGATCAAATTTGTCGTTTCACATCCGATAGTAAAGAAAGATTTCGAGGTAATGCCGGGGTGGTTGTTACAACTTATAACATGGTTGCTTTTGGCGGTAAAAGATCTGAAGAATCTGAAAAAATTATTGAAGAGATAAGAAATAGAGAATGGGGATTACTTCTCATGGATGAGGTGCACGTGGTTCCTGCTCACATGTTTCGGAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGATGAAAGAATTACAGATTTAAATTTCCTTATTGGTCCTAAGTTGTATGAAGCGAATTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCCAACAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAACGTGGTGATAAGATAATTGTCTTCGCTGACAATCTTTTTGCACTTACCGAGTATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCGACAAGTCATCTTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGCCGTGATGTGAATACCGTCTTTCTATCAAAGGTGGGTGATAACTCTATTGATATTCCTGAGGCAAATGTAATTATTCAGATTTCATCTCATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGGCGTATTCTTAGGGCCAAGGGTAAACTTCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAAAGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTTATTACAAGCTTGCCACCAGCTGATACAGGAGCTGATTTGAGCTATCATCGACTTGATGATCAGTTGTCACTTCTTGGGAAGGTACTGAATGCAGGCGATGATATGGTAGGATTGGAGCAATTAGAAGATGATACAGACCAAATTGCACTTGATAAGGCTCGCCGTTCGATGGGATCCATGAGTGCAATGTCGGGCGCACATGGAATGGTTTACATGGAGTACGGTACTGGACGAAGACTCGCGGGTCAAGGGCAGATGATTAAGAGCAAGCCTAAAGACCCGGCGAAGAGACATCATCTGTTCAAAAAGCGGTTTACCTGA 2478 42.41 MLNLLNRRTAEARSQGSSFDSRFGITLSSGFPFITIFRRKSTPSDHTAICASHFEAMGHGDKGRPGKRPKFNKEDYKKAGLEDDEVYHLDDFDDDDRHGDKEAKRDFSKLELKPDHTNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLGKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARIIPEDFRGDGEFTISKTASELTNRHEGLLNEAEAAAAAEDRETHSFEIDSAQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADTGADLSYHRLDDQLSLLGKVLNAGDDMVGLEQLEDDTDQIALDKARRSMGSMSAMSGAHGMVYMEYGTGRRLAGQGQMIKSKPKDPAKRHHLFKKRFT 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 65965597 65975218 - Hsped.06g15260.1 Hepe06g1526 572901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1526 825 Gene3D - 327 518 IPR027417 -
Hepe06g1526 825 Pfam Type III restriction enzyme, res subunit 336 493 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Hepe06g1526 825 MobiDBLite consensus disorder prediction 811 825 - -
Hepe06g1526 825 CDD DEXHc_XPB 329 498 - -
Hepe06g1526 825 CDD SF2_C_XPB 529 693 - -
Hepe06g1526 825 Pfam ERCC3/RAD25/XPB C-terminal helicase 518 765 IPR032438 -
Hepe06g1526 825 MobiDBLite consensus disorder prediction 803 825 - -
Hepe06g1526 825 Coils Coil 261 281 - -
Hepe06g1526 825 SMART ultradead3 333 514 IPR014001 -
Hepe06g1526 825 Pfam Helicase conserved C-terminal domain 121 243 IPR032830 -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 119 139 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 683 706 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 646 671 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 560 575 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 318 344 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 580 602 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 774 793 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 205 224 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 627 645 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 349 371 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 456 476 - -
Hepe06g1526 825 PRINTS Xeroderma pigmentosum group B protein signature 522 544 - -
Hepe06g1526 825 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 565 731 IPR001650 -
Hepe06g1526 825 FunFam Probable DNA repair helicase RAD25 327 518 - -
Hepe06g1526 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 766 IPR027417 -
Hepe06g1526 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 512 IPR027417 -
Hepe06g1526 825 NCBIfam DNA repair helicase rad25 106 822 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
Hepe06g1526 825 FunFam Putative DNA repair helicase rad25 519 761 - -
Hepe06g1526 825 Gene3D - 519 759 IPR027417 -
Hepe06g1526 825 SMART helicmild6 593 671 IPR001650 -
Hepe06g1526 825 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 510 IPR014001 -
Hepe06g1526 825 PANTHER RAD25/XP-B DNA REPAIR HELICASE 101 793 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1526 K10843 - - csv:101215293 1409.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30