Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1537 ATGGATTTGCAGAGGCATTTTCTTGGTGGGTTTGTCATATCTTCTCTGGTTTTGCTGCTGATTTTTCCTTCTCACGTGATGGCTGGGGATATTGTTCATCACGACGATTTGACTCCCCAAAAGCCTGGCTGTGAAAATGACTTCATTCTGGTTAAAGTTCAAACTTGGATTGATGGCATAGAAGCCAGTGAATTTGTCGGTGTCGGTGCTAGATTTGGCGCTACCATTGTGTCAAAGGAGAAAAAGGCAAACCAAACACGCCTAGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCAAAGAACAAGCTTTCGGGAGATATAATCATGGTCGATCGAGGTCACTGCAAATTTACGACGAAAGCAAATATTGCAGAAGCTGCAGGTGCTTCAGCTATACTCATAGTAAATAACCAAAAAGAGCTTTATAAGATGGTTTGTGATCCTGATGAGACTGATCTAGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGTACAAGCTTGGAGAAGATGCTAATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTACGATCTTGTGCTCGTCTTTTTGGTCTGCTTGGAGTGCTAGGGAAGCAGCTATTGAGCAGGACAAGCTACTAAAGGATGGGGCGGATGATATTCAAAATGCTGAAGATATGGGCAGCCCTGGTGTCGTATATATTAACATGGCATCAGCAGTCCTGTTTGTTGTCGTTGCGTCGTGCTTTTTGATCTTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTGGTAGTCCTTTTCTGCATAGGAGGTGCAGAGGGTTTGCAAACTTGTTTGGTCGCGTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCGTACATCAAAATGCCATTCTTTGGAGCTGTTTCATACCTCACTGTGGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTCTTTGGGCTGTTTATCGGAGTGTGTCGTTTGCCTGGATTGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTCCAAATAGTTCGTATACCGAATCTCAAGGTTGGAACAGTGCTCCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGATGGCATCCCGATGCTTCTAAAGATCCCGCGCATGTTTGATCCATGGGGTGGTTATAGCATTATTGGATTCGGTGACATCCTTTTACCTGGACTCGTAGTAGCGTTTTCTCTCAGGTATGACTGGTTGGCGAATAAAAGCCTCCGGGTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGATCAGGTCTTCTGATTACCTATGTGGCTTTGAACCTGATGGACGGCCATGGCCAGCCTGCGCTGCTTTACATCGTCCCGTTCACTCTCGGAACTCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGGCCTGCCCTCATGCCCATCTTCTCATCAATGATGATTAA 1623 44.73 MDLQRHFLGGFVISSLVLLLIFPSHVMAGDIVHHDDLTPQKPGCENDFILVKVQTWIDGIEASEFVGVGARFGATIVSKEKKANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDMGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKMPFFGAVSYLTVAVSPFCIAFAVLWAVYRSVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRVGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERACPHAHLLINDD 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66068120 66075809 - Hsped.06g15370.1 Hepe06g1537 572912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1537 540 SUPERFAMILY PA domain 95 143 IPR046450 -
Hepe06g1537 540 PANTHER SIGNAL PEPTIDE PEPTIDASE 93 523 IPR007369 GO:0005765(PANTHER)|GO:0016020(InterPro)|GO:0030660(PANTHER)|GO:0033619(PANTHER)|GO:0042500(PANTHER)|GO:0042500(InterPro)|GO:0071458(PANTHER)|GO:0071556(PANTHER)
Hepe06g1537 540 Pfam PA domain 87 171 IPR003137 -
Hepe06g1537 540 SMART psh_8 247 514 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Hepe06g1537 540 Gene3D - 55 188 - -
Hepe06g1537 540 Pfam Signal peptide peptidase 248 525 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Hepe06g1537 540 FunFam Signal peptide peptidase-like 3 50 189 - -
Hepe06g1537 540 CDD PA_GO-like 47 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1537 K09597 - - csv:101216966 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1537 Hepe-Chr6:66068120 Hepe07g0148 Hepe-Chr7:1354298 3.62e-20 dispersed
Hepe03g0953 Hepe-Chr3:48189134 Hepe06g1537 Hepe-Chr6:66068120 1.63e-121 transposed
Hepe03g0559 Hepe-Chr3:10893557 Hepe06g1537 Hepe-Chr6:66068120 2.72e-296 wgd
Hepe06g1537 Hepe-Chr6:66068120 Hepe07g0146 Hepe-Chr7:1338289 4.28e-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g312 . . . . . . . . . . Cma02g01443 Cma15g01234 Car02g01211 Car15g01111 . . Cpe05g00343 . . . . . . . . . . . . . . Cone8ag0298 Cone12ag0304 . . . Csa05g00272 Chy09g01236 . . . . . . . . . . Cmo02g01479 Cmo15g01297 . . . . . Cpe13g00152 Bhi12g00274 . . Lac11g2079 Hepe06g1537 . Lcy12g1640 . . . . . . . Lsi09g00248 . . Cme09g01770
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002068 3 3 2 4 2 1 4 1 1 2 1 1 2 2 2 3 1 4 4 1 2 2 2 1 3 2 2 2 3 2 65