Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1538 ATGGAGTACCAACTGGATCACAAGAAAGCCCAATTTCAGAGCCCGGCCCATTTCAATATTCAAATCGTTATCCGCTTGAATCCTCCGTCCTCGTCGGAACTGCAGCGAGTTACCGCTAAAGACTCCGGTCTGAAAACCTCCATTTCCATGGCGTCGACCTTCACTTTCCTTCCATTTCCCCTCATTCTCTCTCCTCGCCCCAATATTCCGTCTCACAGACCTCAATTCCACCGCCAGTATCTTCCCGCCATTCGAATTCTCCGACCTTCAGTTCCTTCCGCCATCGGGCCGGACGGCAAGTTCTACCCGGACCCTGCCGACGACGAACCTCCGGAAGCTTTGGAAGATGCTGATCATGGCGTTTCGAAGTTTCAGCAGATATACCGACAAGCGGCTCGTGCGCGAAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTTTCTGTCGGCCATTGCTGACGTCGAGGATGCTCCTGAGAATGCTGATGATTTGAATTTGGAGAGCTCTGGAGATGATTTGTTCGGTGAAATTGATAAAGCTATTGCTATGAAGCGGAGGGAGTTCGTGAAGCAGGGACTTCTCAAGCCGAATCCGAAGAAGGAAAAGGCGGTTGAGAAGGATGGTGTTGAGGTCGTTGATGAGTTGGAGACGGAGGAGGTCGCGGATTTGGAGGAGATTGACGAGCTTCAGGGGCTTAAAGTGATTGCAGAGGACGAGGATGAAGATGAGCCTGGTAATTTGGATGATGATGTAAGTGAATTAGGTGATCAGGATCAACTATCTGCTTTTAATTCTTTTGATGTAGATTTTGATAGCTATGGAAAAGTTAAGGCTAGGATTGTGGAACCTAAGTTCAAAATGACTTTAGCTGAGCTATTGGATGAAAGTAAGGTCGTTCCCGTTTCTGTTTTTGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGACTCGAGGACGGTTAACGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGGCACTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAAACGTAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAATTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCATCAAAGAATATGGCAGTGATAGGAATAACTGGGACAGATGGTAAAACCAGCACTTCCTATTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCATATTATTTACATGGGGACAATAAGTTGGATTCGCCAAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGTGGCAGGTGTGATGAAGTTGACTTTGATATAGCGGTTTTCACAAATTTGACTAGGGACCATTTGGATTTTCAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAGAAGGATGGTGGATCCAGACCGACATCGAAAAGTTGTTAACATTGACGATCCCAATGCACCATTCTTCATAGGTCAAGGAAACCCAGAAGTGCCTGTTGTCACATTTGCAATGGAAAACAAAAATGCTGATGTCCATCCCCTGAAATATGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGCATACTTGAGATATCATCAGGGTTGCTTGGAAAGCATAACATATACAATATTCTTGCAGCAGTGGCAGTAGGGATTGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAGGTTGATGCTGTTCCAGGGAGATTCGAGCTGATTGACGAGGAGCAGGCATTTGGTGTGATTGTTGATCAAGCTCATACTCCAGATGGCCTGTCCCGACTACTCGATTCTGTAAGGGAGCTCGGGCCAAGGAGGATTATCACTGTTTTTGGATGCTCTGGTGAGCATGACAGAGGGAAAAGACCCATGATGACAAAGATTGCAACCGATAAAAGTGATGTTACAATTCTAACATCTGATAATCCAAGGAATGAAGATTCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGTGAACATGATTACTATCCGCCTCTCTCAAATGGTCATAGGATTTTCCTGCATGATATTAGACGTGTGGCTGTACGTGCTGCGGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATAGAAGGTGATAAAAAAGATTTTTTTGACGATAGAGAAGAATGCAGAGAAGCATTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACGAGTGAATTTCCATGGCGGTTACCAGAGAGTCATTGA 2469 45.44 MEYQLDHKKAQFQSPAHFNIQIVIRLNPPSSSELQRVTAKDSGLKTSISMASTFTFLPFPLILSPRPNIPSHRPQFHRQYLPAIRILRPSVPSAIGPDGKFYPDPADDEPPEALEDADHGVSKFQQIYRQAARARKLQEEDFKKHQSTFLSAIADVEDAPENADDLNLESSGDDLFGEIDKAIAMKRREFVKQGLLKPNPKKEKAVEKDGVEVVDELETEEVADLEEIDELQGLKVIAEDEDEDEPGNLDDDVSELGDQDQLSAFNSFDVDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRTVNAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEINVEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLDSPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFQGSEEEYRDAKAKLFRRMVDPDRHRKVVNIDDPNAPFFIGQGNPEVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDQAHTPDGLSRLLDSVRELGPRRIITVFGCSGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDSLDILDDMLAGIGWTMQDYLKHGEHDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66077822 66085824 - Hsped.06g15380.1 Hepe06g1538 572913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1538 822 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 289 798 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Hepe06g1538 822 Gene3D - 392 630 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Hepe06g1538 822 Pfam Mur ligase, glutamate ligase domain 629 774 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Hepe06g1538 822 Gene3D - 290 390 - -
Hepe06g1538 822 SUPERFAMILY MurD-like peptide ligases, catalytic domain 392 624 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Hepe06g1538 822 Pfam Mur ligase family, catalytic domain 312 389 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Hepe06g1538 822 SUPERFAMILY MurE/MurF N-terminal domain 306 390 IPR035911 -
Hepe06g1538 822 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 627 799 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Hepe06g1538 822 Pfam Mur ligase middle domain 401 606 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Hepe06g1538 822 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 632 805 - -
Hepe06g1538 822 Gene3D - 632 809 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Hepe06g1538 822 PANTHER MUR LIGASE FAMILY MEMBER 276 805 - -
Hepe06g1538 822 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 311 799 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1538 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37