Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1540 ATGGACCCCAAAGAAGTCAAGTCCGACTTGGTATTGATTCTCGACTTCGGTTCTCAGTACACCCATCTCATCACTCGCCGGATTCGGAGCCTCTCTGTTTTCTCTCTCTGTATTTCCGGAACTTCTCCTCTGAAGGCCATCACTGATCTCAACCCACAAGTTGTTATTCTCTCCGGCGGGCCTCACTCCGTCCATGCTGACGACTCTCCGAGTTTCCCTTCTGGGTTCGTCGAGTGGGCGGAGGCCAATGGGGTTTTTGTTTTGGGGATTTGTTATGGCCTTCAGTTGATTGTGCAGAGGTTGGGAGGTGTGGTGAAGATTGGGGAGAAGCAGGAGTATGGGAGGATGGAGATTGAGGTGGAGAAGAAGGCTAATGGGTTGTATGGGACTAAGAAGGTTGGGGATAAACAAGTTGTTTGGATGAGCCATGGTGATGAGGTCGCGAAACTTCCTGAAGGGTTTGATGTGGTGGCGAGGAGTCAACAAGGGGCTGTTGCGGCTGTGGAAAATCATTCCAGGAAGTTTTATGGGTTGCAGTATCATCCGGAGGTGACACATTCACCAGAAGGAATGGAAACGCTACGTTATTTTCTCTTTGATGTCTGTGGAATTAATGCTACCTGGAAGATGGAGAATATACTAGATGAAGAAATTAAAGTAATCAAGGAAACTGTGGGACCAGACAATCACGTGATATGTGCATTATCAGGGGGTGTGGATTCAACAGTTGCTGCAACTCTTGTTCATAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTCGACAATGGTTTATTGAGGTATAAAGAAAGAGAACGTGTTATGGAAACTTTTGAAAGAGATCTCCATTTGCCCGTTACTTGTGTTGATGCCATCGATGATTTTCTTAGCAAGCTTAAAGGTGTAGTAGACCCCGAGGCGAAAAGAAAAATAATTGGAAAGGAGTTCATTTCTATATTTGATTCTTTCGGCCATGAGTTGGAACGTAAAATTGGTAAGAAACCTGCATACTTGGTCCAAGGAACATTGTATCCTGATGTAATTGAATCTTGTCCACCACCTGGATCTGGTAAAACCCATTCCCACACAATCAAAAGTCATCATAACGTTGGAGGACTTCCCAAGGACATGAAACTGAAACTTATTGAGCCACTTAAACTCCTCTTTAAGGATGAGGTACGCCAACTCGGAAGGATATTGAATGTTCCTGATGCGTTTCTAAAGCGTCACCCTTTTCCTGGGCCTGGTCTTGCTGTACGGGTGTTGGGCGACGTAACAGAAGGCAATGCCTTGGAAGTTCTTCGCCAGGTTGATGAGATTTTTATTCAATCAATCAAGGATGCTGGGCTTTATGATTCAATATGGCAAGCTTTTGCAGTGTTTTTGCCTATAAAATCAGTTGGAGTTCAGGGTGATCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGTTTGATTTTGAGCACCAGTTCCTAGATGATGTGTCAAGAAAAATTTGCAATAGCGTTCGGGGCGTAAACAGGGTTGTTCAAGACATTACGTCGAAGCCTCCATCGACAATTGAATGGGAATGA 1608 44.59 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHADDSPSFPSGFVEWAEANGVFVLGICYGLQLIVQRLGGVVKIGEKQEYGRMEIEVEKKANGLYGTKKVGDKQVVWMSHGDEVAKLPEGFDVVARSQQGAVAAVENHSRKFYGLQYHPEVTHSPEGMETLRYFLFDVCGINATWKMENILDEEIKVIKETVGPDNHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDAIDDFLSKLKGVVDPEAKRKIIGKEFISIFDSFGHELERKIGKKPAYLVQGTLYPDVIESCPPPGSGKTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWFDFEHQFLDDVSRKICNSVRGVNRVVQDITSKPPSTIEWE 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66109463 66113012 + Hsped.06g15400.1 Hepe06g1540 572915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1540 535 CDD GATase1_GMP_Synthase 11 198 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 Gene3D - 415 535 - -
Hepe06g1540 535 FunFam GMP synthase [glutamine-hydrolyzing] 420 535 - -
Hepe06g1540 535 PANTHER GMP SYNTHASE-RELATED 6 535 - GO:0003921(PANTHER)|GO:0005829(PANTHER)|GO:0006177(PANTHER)
Hepe06g1540 535 NCBIfam glutamine-hydrolyzing GMP synthase, C-terminal domain 212 535 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 FunFam GMP synthase [glutamine-hydrolyzing] 8 206 - -
Hepe06g1540 535 FunFam GMP synthase [glutamine-hydrolyzing] 209 419 - -
Hepe06g1540 535 Pfam GMP synthase C terminal domain 444 534 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 Gene3D HUPs 209 414 IPR014729 -
Hepe06g1540 535 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 8 535 IPR022955 GO:0003922(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 Pfam Glutamine amidotransferase class-I 12 200 IPR017926 -
Hepe06g1540 535 NCBIfam glutamine-hydrolyzing GMP synthase, N-terminal domain 11 204 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 414 535 - -
Hepe06g1540 535 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 207 - -
Hepe06g1540 535 PRINTS Glutamine amidotransferase superfamily signature 177 190 - -
Hepe06g1540 535 PRINTS Glutamine amidotransferase superfamily signature 55 64 - -
Hepe06g1540 535 PRINTS Glutamine amidotransferase superfamily signature 86 97 - -
Hepe06g1540 535 Pfam tRNA methyl transferase HUP domain 230 265 - -
Hepe06g1540 535 CDD GMP_synthase_C 230 534 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Hepe06g1540 535 Gene3D - 4 205 IPR029062 -
Hepe06g1540 535 SUPERFAMILY Class I glutamine amidotransferase-like 9 238 IPR029062 -
Hepe06g1540 535 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 197 428 - -
Hepe06g1540 535 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 208 409 IPR025777 GO:0003921(InterPro)|GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1540 K01951 - - csv:101217911 1026.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33