Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1577 ATGTCGAATCAAGATCTGGAGCGAGGGGCGGCTAAGAATCCGGCGAACAGTAACCCAAATGAGAACTATACAGCTGCTCCTTACTACATAGAGACTTCGGAGAAGCAATGGACGCCATGGTTGGTTCCTATGTTCGTTGTGGCTAATATTGCTATGTTCATTGTGGTTATGTATCTCAATAATTGCCCTGATTCCAATTTGGGTTTTGGAGATAAGTGTGTCGCTAGATTTCTTGGCCGGTTTTCGTTTCAGCCTCTCAACGAGAATCCCCTCTTGGGACCCTCTTCCAATACATTGGTGAAATTGGGAGCTTTGAAATGGGACAAAGTTGTTCATGAGCATCAAGGATGGAGACTTCTCTCTTGTATTTGGTTGCACGCTGGAATCATTCATCTTCTTGCAAATATGTTGAGTTTGATTCTGATTGGGATCCGCCTTGAGCAGCAATTTGGATTTGTGCGTATCGGGATAATATATCTCGTGGCTGGAGTTGGTGGGAGCGTAATGTCTTCCCTGTTCATCCAAAACAACATTTCTGTTGGTGCCTCTGGTGCCCTCTTTGGACTTCTTGGAGCTATGCTCTCCGAGCTTTTGACGAACTGGACGATTTACACCAACAAGGCTGCTGCATTCTTCACCCTCATCGTTATCGTAGCAATTAACTTGGCAGTCGGAATTCTACCTCATGTAGACAACTTCGCCCACATTGGAGGATTCTTAACAGGATTCCTTCTCGGGTTTGTGTTGCTCATCCGTCCCCAGTTTAAGTGGACCGAGCGCCACCATCTCCCACCCAGTGCTCGGACCGTACCCAAGTATAAAATTTATCAGTATATTCTCTGGCTGGCTGCTGCACTTCTACTAGTTGCTGGCTTTACAGTGGGGCTGGTGATGCTATTCAGAGGGGAGAATGGAAACAAGCACTGCAGCTGGTGCCATTACCTAAGTTGTGTTCCAACCTCAAAATGGGACTGTGGAAATTAG 984 46.34 MSNQDLERGAAKNPANSNPNENYTAAPYYIETSEKQWTPWLVPMFVVANIAMFIVVMYLNNCPDSNLGFGDKCVARFLGRFSFQPLNENPLLGPSSNTLVKLGALKWDKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLILIGIRLEQQFGFVRIGIIYLVAGVGGSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKAAAFFTLIVIVAINLAVGILPHVDNFAHIGGFLTGFLLGFVLLIRPQFKWTERHHLPPSARTVPKYKIYQYILWLAAALLLVAGFTVGLVMLFRGENGNKHCSWCHYLSCVPTSKWDCGN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66521449 66523943 + Hsped.06g15770.1 Hepe06g1577 572952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1577 327 Gene3D - 38 253 IPR035952 -
Hepe06g1577 327 SUPERFAMILY Rhomboid-like 36 256 IPR035952 -
Hepe06g1577 327 Pfam Rhomboid family 114 250 IPR022764 GO:0004252(InterPro)|GO:0016020(InterPro)
Hepe06g1577 327 FunFam RHOMBOID-like protein 35 252 - -
Hepe06g1577 327 PANTHER RHOMBOID-RELATED 13 327 IPR002610 GO:0006508(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1577 K27605 - - csv:101203649 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2117 Hepe-Chr1:85792617 Hepe06g1577 Hepe-Chr6:66521449 7.57e-09 dispersed
Hepe05g0169 Hepe-Chr5:2084189 Hepe06g1577 Hepe-Chr6:66521449 1.95e-145 dispersed
Hepe06g1577 Hepe-Chr6:66521449 Hepe10g1243 Hepe-Chr10:47805510 3.24e-149 dispersed
Hepe06g1211 Hepe-Chr6:61670049 Hepe06g1577 Hepe-Chr6:66521449 4.41e-187 wgd
Hepe06g1577 Hepe-Chr6:66521449 Hepe07g0178 Hepe-Chr7:1589189 1.26e-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g376 . . . . . . . Bma14g00584 . Cmo16g01061 . . . . . . Cpe05g00311 . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00049 . . . . . . . . . . . . . Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 . . . . . . . . . . .
Vvi16g614 . Blo15g00159 . . . Bpe07g00948 . . Cmo16g00147 . . Cma15g01202 . Car15g01089 . . Cpe14g00119 . . . . . . . Cla01g00295 Cam01g0306 Cec01g0296 Cco01g0313 Clacu01g0306 Cmu01g0291 Cre09g2217 . . . . Lsi05g01251 Csa05g00318 Chy09g01190 Cme06g00976 . . Bda06g00673 Bda15g00736 . Bpe12g00418 . . . . . Cma16g00141 . . . . Cpe13g00173 Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 Cla05g00860 Cam05g0946 Cec05g0951 Cco05g0951 Clacu05g0933 Cmu05g0891 Cre05g0976 . Csa03g01690 Chy06g00923 Cme09g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163