Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1585 ATGGAAAAGAATTATTCAATGGATTGGTTCACCCAATTTTCTGATCCTATTCCTTATTATGGAAATTACAATTACAAGTCGGAATCCCCGTCGACGTTGTCAGATGCCGGAACGCCGCCGCACGCAGTAGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCGAAACGGCGGGCTGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTTTACAGAGGGGTTCGGCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGTTGCCGAATAAGAAGACGAGGATTTGGCTCGGGACTTACCTGACGCCGGATATGGCAGCGCGTGCACACGACGTGGCGGCACTCGCATTGAGAGGGAAATCGGCTTGTCTCAATTTCGCGGACTCGGCCTGGCGGTTTCCGATTCCGACGAGTGATGACCCGTCTGTCATCAGGGCGGCGGCGGCAAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGGCGTTGTTTTGGATCAGCCCACGGCGGAGGCTGATCGGCCGGTTTATGTCGACGATGAGGATTTGTCCAATATGCCGATGTTGCTTGCCAGCATGGCAGAGGGGCTTCTTCTTTCTCCTCCTCATTTTTGGGTATGTGATGACGTGGAGTGGGATGATGTGGCTATAAGTGATGACGTGTCATTGTGGAACTTTTAG 708 53.39 MEKNYSMDWFTQFSDPIPYYGNYNYKSESPSTLSDAGTPPHAVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELRLPNKKTRIWLGTYLTPDMAARAHDVAALALRGKSACLNFADSAWRFPIPTSDDPSVIRAAAARAANECKDEECNVGREEDGVVLDQPTAEADRPVYVDDEDLSNMPMLLASMAEGLLLSPPHFWVCDDVEWDDVAISDDVSLWNF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66641665 66642503 + Hsped.06g15850.1 Hepe06g1585 572960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1585 235 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677(InterPro)
Hepe06g1585 235 Pfam AP2 domain 72 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Hepe06g1585 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 30 235 IPR045277 GO:0003700(InterPro)
Hepe06g1585 235 CDD AP2 74 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1585 235 SMART rav1_2 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1585 Hepe-Chr6:66641665 Hepe07g0192 Hepe-Chr7:1719533 5.20e-64 dispersed
Hepe06g1584 Hepe-Chr6:66597853 Hepe06g1585 Hepe-Chr6:66641665 1.41e-29 tandem
Hepe06g1290 Hepe-Chr6:62893022 Hepe06g1585 Hepe-Chr6:66641665 1.04e-59 transposed
Hepe05g1908 Hepe-Chr5:69407769 Hepe06g1585 Hepe-Chr6:66641665 5.89e-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55814 PF00847 AP2 1.20E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1585 - - - 0.0