Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1595 ATGATGCAAGAACAACCTGGGTTGGGAATGATGACGCCTGCTGCTGGGTCTTCTGCTGCTTTAAGCGGCGACGTTTCTGTCTCCGGCGAGGGGCTTCACAACGCTCAGCTCAAGGCGGAGATTGCTACTCATCCACTCTATGAGCAGCTTTTATCGGCTCATGTTGCTTGTCTTCGTGTTGCTACGCCGATTGATCAACTTCCGATGATTGACGCTCAGTTGTCTCAATCGCATCATGTTTTGCGATCTTATGCTTCTCATCATCAACATACTCATTCTTTATCGCCTCATGAGCGCCAAGAGCTCGACAATTTTCTGGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTCGAAGCTGTTATGGCTTGCCGTGAAATTGAAAATACTCTTCAAGCTCTTACAGGAGTGAGCCTTGGTGAGGGCACCGGTGCAACGATGTCGGACGACGACGATGACGTTCCGATGGACTTTTCACTTGATCAATCTGGCACCGATGCACACGACATGATGGGGTTCGGGCCACTGCTTCCAACCGAATCCGAAAGGTCATTGATGGAGAGGGTTCGACAGGAACTGAAGATCGAGTTAAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAATTGCCTGGTGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAGGACGACAAGGCGAAGCTGGTCGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCCAAGCGCAAGAGATAA 903 47.62 MMQEQPGLGMMTPAAGSSAALSGDVSVSGEGLHNAQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASHHQHTHSLSPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDDDDVPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66740123 66744630 - Hsped.06g15950.1 Hepe06g1595 572970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1595 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677(InterPro)
Hepe06g1595 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Hepe06g1595 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677(InterPro)
Hepe06g1595 300 SMART KNOX1_2 35 79 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe06g1595 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe06g1595 300 FunFam homeobox protein knotted-1-like 3 isoform X1 224 285 - -
Hepe06g1595 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe06g1595 300 CDD homeodomain 226 287 IPR001356 GO:0003677(InterPro)
Hepe06g1595 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe06g1595 300 Pfam KNOX1 domain 37 78 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe06g1595 300 SMART HOX_1 225 290 IPR001356 GO:0003677(InterPro)
Hepe06g1595 300 Gene3D - 222 296 - -
Hepe06g1595 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1595 Hepe-Chr6:66740123 Hepe10g0232 Hepe-Chr10:2468647 2.07e-124 dispersed
Hepe06g1595 Hepe-Chr6:66740123 Hepe01g1989 Hepe-Chr1:84698643 9.91e-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55815 PF03791 KNOX2 5.20E-18 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1595 - - - 0.0