Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1597 ATGGTGAGAGGGAAAACTCAAATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGCGCAGAAATGGGCTTCTCAAGAAAGCATTTGAGCTATCTGTTCTTTGTGATGCTGAACTTGCACTCATCATTTTTTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACTATTGATCGATATCAGACCAGAACCAAAGATTTGATGTCTAGTAACAGCACAGCCATGGAAGATGTTCAGTTGGAGAAGGAATATGACTCCTTTAGCATGAGTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGGTACAATGTTTTTTCTCCCTTAATTTTAATTTAATTTCCCTTTTTAGATTTGTTTTCAATATGTTTTTTCAATCTCAGTTTCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCTGATTAAGGTTGGAACTGAATCATCAAAAAAAGCAGAAAGCAAGGAGAGATCAGAATCAAATGGCCAAGAGATTATGGATGTAGAAACTGAACTGTTCATAGGACCAACCAGAAAGAAGAAGCAGCAGTAA 714 37.25 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSPRGKLYEFSNCSMNKTIDRYQTRTKDLMSSNSTAMEDVQLEKEYDSFSMSKKLEHLEVCKRKLLGDGLDLCSIEELQQLERQLERSLSKIRSRKVQCFFSLNFNLISLFRFVFNMFFQSQFQMLKEEIMKLKEEEKMLLEENAALLIKVGTESSKKAESKERSESNGQEIMDVETELFIGPTRKKKQQ 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66778398 66783383 + Hsped.06g15970.1 Hepe06g1597 572972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1597 237 MobiDBLite consensus disorder prediction 200 221 - -
Hepe06g1597 237 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Hepe06g1597 237 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 Coils Coil 163 197 - -
Hepe06g1597 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 MobiDBLite consensus disorder prediction 202 218 - -
Hepe06g1597 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 Coils Coil 122 145 - -
Hepe06g1597 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe06g1597 237 Pfam K-box region 89 147 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe06g1597 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe06g1597 237 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe06g1597 237 ProSiteProfiles K-box domain profile. 88 204 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1313 Hepe-Chr6:63233347 Hepe06g1597 Hepe-Chr6:66778398 2.58e-43 dispersed
Hepe06g1597 Hepe-Chr6:66778398 Hepe07g2445 Hepe-Chr7:68790461 4.43e-38 dispersed
Hepe05g1897 Hepe-Chr5:69311646 Hepe06g1597 Hepe-Chr6:66778398 1.23e-46 wgd
Hepe06g1597 Hepe-Chr6:66778398 Hepe07g0203 Hepe-Chr7:1805681 1.99e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55816 PF01486 K-box 3.80E-18 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1597 - - - 0.0