Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1599 ATGGAAGATCAACGGACCCATCAATCTTCTACTAGGGCTTCTCCTTCTCCTTCTTCTTCTTCCCCGCAGCTCAATTTGCCTCCTTCAATGTCACGAGCTTCCTCTCACTCCCTCGAAACCCTAACCCCATCTCGCCAAATCGACCGCATGATCAATATCAATCACCATTTGTCTCCTTCTAGAGCTATCTACTCTGATAGATTCATTCCCAGTAGATCTGGTTCCAATTTTGCTCTTTTTGATATCTCCCCTGTCTCCAATTCCAACTCCGATGGCCGGGAAGATACTTCCAGTGCTTACGCTACGCTTTTGAGAACGGCTTTGTTTGGTCCTGATTCTGGTGTAGTTCCTCCCGCTACTCCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCCAATCATAATATCTTTCGCTACAAGACTGAGACTAGGAGGTCAATGCACTCCTTATCGCCTTTTGGATTTGATGATGCGGCTCCTGGAGTTAATCCTACTCCGGTTAAGACTCCACGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTGCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTTCGCATAATGTGCTTGCTGTCGGATTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGCAGTAAGGTCACCAAGTTATGTGACTTGGGAATTGATGACAGTGTGTGTTCAGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGAACTAGCAATGGAAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACTATGGAGGGCCATCGGCTACGAGTTGGGGCCTTAGCTTGGAGCTCATCTGTTTTATCATCGGGTAGCCGGGACAAGAGTATCCTTCAAAGAGATATTCGGGCTCAGGATGATTTTGTGTCTAAACTGTCTGGCCATAAATCAGAGGTTTGCGGATTGAAATGGTCATACGATAACCGTGAATTAGCATCAGGAGGAAATGATAACAGATTATTTGTTTGGAATCAACATTCAGCCCAACCCGTACTTAAATTTTATAAGCACACAGCTGCTGTAAAGGCTATAGCATGGTCTCCTCATCTTCATGGGCTACTTGCATCAGGGGGTGGAACTGCAGATCGTTGTATTCGTTTTTGGAACACAACTACTAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCTAAGAATGTTAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAAATAATAGTCTGGAGATATCCAACCATGTCTAAGTTGGCAACATTGACTGGCCATACTTTCAGAGTTCTTTATCTTGCCGTATCTCCTGATGGACAGACCATTGTAACAGGTGCTGGTGACGAAACTCTAAGATTTTGGAATGTGTTTCCTTCGCCGAAATCTCAGAACACTGACAACGAAATCGGAGCATCGTTCCTTGGACGAACCACCATCCGTTAA 1488 45.36 MEDQRTHQSSTRASPSPSSSSPQLNLPPSMSRASSHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSNSDGREDTSSAYATLLRTALFGPDSGVVPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDAAPGVNPTPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSAQPVLKFYKHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDNEIGASFLGRTTIR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66807451 66810762 - Hsped.06g15990.1 Hepe06g1599 572974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1599 495 Pfam WD domain, G-beta repeat 305 340 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 Pfam WD domain, G-beta repeat 434 470 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 Pfam WD domain, G-beta repeat 345 385 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 217 257 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 387 428 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 301 340 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 343 385 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 431 470 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 260 297 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 SMART WD40_4 173 214 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 Gene3D - 166 475 IPR015943 GO:0005515(InterPro)
Hepe06g1599 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 340 - -
Hepe06g1599 495 MobiDBLite consensus disorder prediction 1 39 - -
Hepe06g1599 495 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 37 481 IPR033010 GO:0005680(PANTHER)|GO:0010997(PANTHER)|GO:0010997(InterPro)|GO:0031145(PANTHER)|GO:0097027(InterPro)|GO:1904668(InterPro)|GO:1905786(PANTHER)|GO:1990757(PANTHER)
Hepe06g1599 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 471 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 Pfam Anaphase-promoting complex subunit 4 WD40 domain 227 281 IPR024977 -
Hepe06g1599 495 SUPERFAMILY WD40 repeat-like 183 471 IPR036322 GO:0005515(InterPro)
Hepe06g1599 495 ProSitePatterns Trp-Asp (WD) repeats signature. 457 471 IPR019775 -
Hepe06g1599 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 471 - -
Hepe06g1599 495 FunFam FIZZY-related 2 isoform 1 173 473 - -
Hepe06g1599 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515(InterPro)
Hepe06g1599 495 MobiDBLite consensus disorder prediction 8 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1599 K03364 - - csv:101220762 947.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3049 Hepe-Chr2:79623671 Hepe06g1599 Hepe-Chr6:66807451 1.28e-199 dispersed
Hepe06g1599 Hepe-Chr6:66807451 Hepe06g1790 Hepe-Chr6:68961273 3.25e-117 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37