Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1601 ATGGCTTCTTTTTCAGCCTTGTTGGTGCCATTGGTTTTCGCCATCTTCACCCGATCAACGCTCGCTCTCTTCCAACCGAGCCCGTGGAAGCTCGCTCATGCCACCTTCTATGGCGACGAAACTGCCTCCGAAACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACAAATGGGTATGGAACTGATACGGCGGCGTTGAGCTCGACACTGTTCAACAATGGCTACGCCTGCGGGACTTGCTTTCAGCTCAAATGCATCCAGTCGAAGGCCTGCTACGCGAACGTGCCGGTTCCATGTGTAAAAAAGGGAGGTGTTCGATTCAGCTTACAAGGAAATGGGTATTGGCTATTGGTGTATGTGATGAACGTAGGAGGAGGAGGTGATGTTTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCTTATCAAGCTTTTTCCTCATTGGGTGGCCAAGTACTTTCTTTCAGAATCACTTCTTACACAACCAGAGAAACCATTACTCTATGGAATGTCCTTCCTGCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCGTTGA 603 47.26 MASFSALLVPLVFAIFTRSTLALFQPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQLKCIQSKACYANVPVPCVKKGGVRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQVLSFRITSYTTRETITLWNVLPANWQVGLTYNSNLNFR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 66839854 66843064 - Hsped.06g16010.1 Hepe06g1601 572976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1601 200 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 115 IPR007112 -
Hepe06g1601 200 Gene3D - 15 106 IPR036908 -
Hepe06g1601 200 PANTHER EXPANSIN-A15 98 195 IPR002963 GO:0009664(InterPro)
Hepe06g1601 200 Pfam Expansin C-terminal domain 106 184 IPR007117 -
Hepe06g1601 200 SUPERFAMILY Barwin-like endoglucanases 28 123 IPR036908 -
Hepe06g1601 200 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Hepe06g1601 200 PRINTS Expansin/Lol pI family signature 180 194 IPR007118 GO:0005576(InterPro)
Hepe06g1601 200 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Hepe06g1601 200 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Hepe06g1601 200 Gene3D - 107 200 IPR036749 -
Hepe06g1601 200 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 115 195 IPR007117 -
Hepe06g1601 200 SUPERFAMILY PHL pollen allergen 102 195 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1601 Hepe-Chr6:66839854 Hepe10g1240 Hepe-Chr10:47669621 3.47e-52 dispersed
Hepe02g0880 Hepe-Chr2:10517200 Hepe06g1601 Hepe-Chr6:66839854 3.63e-53 transposed
Hepe06g1202 Hepe-Chr6:61549136 Hepe06g1601 Hepe-Chr6:66839854 1.71e-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1601 - - - 0.0