Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1622 ATGGATGCCCATTCCCTCCCCCCTCCTTTCCACACCCGGGATTTCCATCTCCAACAACAACAATTCCATCACCACAACAACAACAATAATAATAATTCTGAGGAGGAGCACAGCGGCACCACCAGCCGTCTCAAGCGCGATCGCGATCGAGACGACGACGACCACAACAACTCCGCTCTCAACAGCGGTGGTGATGGCGGCGGTGATGGTGAGATCACTCGTCGACCGAGAGGACGACCCGCCGGATCCAAAAACAAACCTAAACCCCCAATTATTATCACTCGGGACAGCGCCAACGCCCTCCGCACTCACGTCATCGAGGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGCACCGGCACCGTCACCAACGTTACTCTCCGTCAGCCGGCCTCCCCCGGTGCAATTGTCAACTTACACGGCCGCTTCGAGATCTTGTCCCTCGCCGGCTCCTTCCTCCCTCCTCCAGCTCCCCCTGCCGCTACCACCTTGACTATTTACCTCGCCGGCGGCCAGGGGCAGGTTGTAGGCGGTAGCGTCGTCGGTACTCTAATCGCCTCCGGCCCCGTCGTCATCATGGCCGCCTCGTTTAGCAACGCCGCTTATGAACGGCTTCCGTTGGAGGAGGACGACCAGCAGCCGATGCCGCCGCTGCAGGGAGACGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCGCAAGCGCCGCAAACGGCGCATCATCAACAGCAGCAACAACAACAGCAACTTCTCGGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTTCTGAATTCAATTCAAATGCCACCATCGGAAGCTGCTTATTGGGCAACTGGCCGTCCTCCCTACTAA 912 59.1 MDAHSLPPPFHTRDFHLQQQQFHHHNNNNNNNSEEEHSGTTSRLKRDRDRDDDDHNNSALNSGGDGGGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQQPMPPLQGDGGIGSPDEVGQSQAPQTAHHQQQQQQQQLLGDGNAPLFHGLPPNLLNSIQMPPSEAAYWATGRPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 67068574 67069485 - Hsped.06g16220.1 Hepe06g1622 572997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1622 303 CDD DUF296 102 168 IPR005175 -
Hepe06g1622 303 MobiDBLite consensus disorder prediction 23 37 - -
Hepe06g1622 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Hepe06g1622 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Hepe06g1622 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Hepe06g1622 303 MobiDBLite consensus disorder prediction 226 287 - -
Hepe06g1622 303 PIRSF ESCAROLA 11 303 IPR014476 GO:0003680(InterPro)
Hepe06g1622 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 303 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Hepe06g1622 303 Gene3D - 101 230 - -
Hepe06g1622 303 MobiDBLite consensus disorder prediction 246 269 - -
Hepe06g1622 303 MobiDBLite consensus disorder prediction 23 93 - -
Hepe06g1622 303 MobiDBLite consensus disorder prediction 38 58 - -
Hepe06g1622 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0262 Hepe-Chr3:3441073 Hepe06g1622 Hepe-Chr6:67068574 1.52e-69 dispersed
Hepe05g1880 Hepe-Chr5:69130990 Hepe06g1622 Hepe-Chr6:67068574 1.17e-84 dispersed
Hepe06g1622 Hepe-Chr6:67068574 Hepe06g1763 Hepe-Chr6:68737986 1.21e-76 dispersed
Hepe06g1622 Hepe-Chr6:67068574 Hepe06g1625 Hepe-Chr6:67129009 4.51e-21 proximal
Hepe05g1875 Hepe-Chr5:69037876 Hepe06g1622 Hepe-Chr6:67068574 7.21e-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1622 - - - 0.0