Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1629 ATGCTCGCTTCCGAGCTAAAAATCTTCTTGAACAACTCTGTAAATGTGAAGCAGGCAACTCAAATTCATGCCCACATTCTCGTCAATGGCCTTCGAAACCTCGATTCTCTCTTGGTCCGTCAAATCACTCGCTCTGAGTTCACTTGCGCCAGAATCGTATCCCGTTATCTCCGACGAATCCTTCACCATTCGCAAAACCCAGATGCGTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATCGAAGCAATCTCCCATTATGTTCAGATGCAGAGATTGGGACTGCGTCCGAGCACTTTTGCTGTATCTTCGACATTGAGAGCTTGCGGTAGGATTATGTGTAAGTTTTCTGGGAGTTATGTTCACGCTCAGGTTTATAAATTGGGGTTTTCTCGCTGTGTTTACGTGCAAACTGCCCTTGTGGATTTTTACTCAAAATTGGGTGATGTGGGTTTTGCTCGGAAGGTGTTTGATGAAATGACTGAGAAAAATGTGGTTTCGTGGAATTCAATCTTGGCTGGTTATGTGAAAATTGGGAACTTAGTTGATGCTCAGGAAGTGTTCGATGAAATGCCTGTGAAAGATGTTATATCTTGGAATTCGATGTTGTCGGGGTTCGCCAATTCTGGGAATATGGATCAAGCGTCCTGTTTATTTCGACAAATGGGGGAGAAAAGTTTGGCTTCTTGGAATGCAATGATCAGTGGTTATGTGAACTGTGGAGATATAAAGTATGCAAGAAACCTGTTTGATGTAATGCCTAAGAGAAATAATGTTTCATGGATTACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGATTCTGCTCGTGAGATCTTTGATAAGATGGGTGAGAAAGATGTTTTCTCTTTTAACGCCATGATTGCTTGCTGTTCACAAAATAGCCTGCCAAATGAAGCATTGGAGTTATTCAACCAAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGTTAGCATTATATCTGCTTGTACTCAGCTGGGGAATCTGAATTATGGTACTTGGATTGAGTCGTATATGGAAAAGCTTGGGATTGAATTGGATGATCATTTGGCCACTGCATTGGTAGACTTGTATGCGAAATCCGGGAACATCGAAAGGGCATTCGAGCTGTTCAATGGTCTGAAAAAGAGGGATTTAGTCGCTTATTCAGCTATGATCTTTGGATGTGGGATAAACGGTAAGGCATTTGATGCAATTAGGTTGTTTGAAGAGATGCTAAGTGTGAACGTCTGCCCGAATCTAGTGACGTATGTCGGGCTGCTTACGGCGTATAATCATGCCGGTTTAGTTGACGAAGGTTACCTTTGCTTCTCGTCCATGAAGGACCATGGACTTGAGCCATTGGCTGATCATTATGGGATCATGGTGGATTTGTTGGGCAGGGCAGGGCGGTTAGAAGAAGCACATGAGCTTATTAAGAGCATGCCAGTGCAGCCTAATGCTGGTGTCTGGGGAGCCTTGCTTCATGCTTGCAGGTTACATAACAACGTTGAGCTCGGTGAGATAGCAAGTCGGAGTTGCTCGAAGTTGGTGACCGATACAACCGGATATCGGTCTCTTCTAGCCAACATCTACTCTTCTGTGGAGAGGTGGGATGATGCTAAGAGATTGAGAAAAGCCATGGGAAATAAAATATTTGCCAAGATATCTGGATGTAGTTGGATGGAGCACTCTAAAATCTGA 1737 43.98 MLASELKIFLNNSVNVKQATQIHAHILVNGLRNLDSLLVRQITRSEFTCARIVSRYLRRILHHSQNPDAFSWGCAVRFFSQNGQFIEAISHYVQMQRLGLRPSTFAVSSTLRACGRIMCKFSGSYVHAQVYKLGFSRCVYVQTALVDFYSKLGDVGFARKVFDEMTEKNVVSWNSILAGYVKIGNLVDAQEVFDEMPVKDVISWNSMLSGFANSGNMDQASCLFRQMGEKSLASWNAMISGYVNCGDIKYARNLFDVMPKRNNVSWITLIAGYSKLGEVDSAREIFDKMGEKDVFSFNAMIACCSQNSLPNEALELFNQMLQPHVNIQPDEMTFVSIISACTQLGNLNYGTWIESYMEKLGIELDDHLATALVDLYAKSGNIERAFELFNGLKKRDLVAYSAMIFGCGINGKAFDAIRLFEEMLSVNVCPNLVTYVGLLTAYNHAGLVDEGYLCFSSMKDHGLEPLADHYGIMVDLLGRAGRLEEAHELIKSMPVQPNAGVWGALLHACRLHNNVELGEIASRSCSKLVTDTTGYRSLLANIYSSVERWDDAKRLRKAMGNKIFAKISGCSWMEHSKI 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 67149519 67151260 - Hsped.06g16290.1 Hepe06g1629 573004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1629 578 Pfam PPR repeat 202 230 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat 71 100 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat 234 262 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat 171 199 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat 469 493 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat 143 170 IPR002885 -
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Hepe06g1629 578 Gene3D Tetratricopeptide repeat domain 27 121 IPR011990 GO:0005515(InterPro)
Hepe06g1629 578 Gene3D Tetratricopeptide repeat domain 125 198 IPR011990 GO:0005515(InterPro)
Hepe06g1629 578 Gene3D Tetratricopeptide repeat domain 199 262 IPR011990 GO:0005515(InterPro)
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Hepe06g1629 578 FunFam Pentatricopeptide repeat-containing protein At4g22760 370 576 - -
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat family 396 442 IPR002885 -
Hepe06g1629 578 Pfam PPR repeat family 292 341 IPR002885 -
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 141 171 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 470 493 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 202 230 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 295 321 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 171 199 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 234 262 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 264 293 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 370 398 IPR002885 -
Hepe06g1629 578 NCBIfam pentatricopeptide repeat 433 465 IPR002885 -
Hepe06g1629 578 PANTHER OS07G0578800 PROTEIN-RELATED 180 227 IPR045215 GO:0003723(InterPro)|GO:0009451(InterPro)
Hepe06g1629 578 FunFam Pentatricopeptide repeat-containing protein chloroplastic 235 365 - -
Hepe06g1629 578 SUPERFAMILY TPR-like 70 290 IPR011990 GO:0005515(InterPro)
Hepe06g1629 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Hepe06g1629 578 Pfam E motif 512 574 IPR046848 -
Hepe06g1629 578 Gene3D Tetratricopeptide repeat domain 263 395 IPR011990 GO:0005515(InterPro)
Hepe06g1629 578 Gene3D Tetratricopeptide repeat domain 396 578 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1629 Hepe-Chr6:67149519 Hepe05g0050 Hepe-Chr5:536779 4.65e-71 dispersed
Hepe06g1629 Hepe-Chr6:67149519 Hepe05g0597 Hepe-Chr5:8945894 5.00e-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31