Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1651 ATGTCATCCTCTTCTTCTTCTTCTTCTCCTACTTCTTCTACTACTGCTGCTGCTACTACTACCACTACTACCTTTTCTCAGCTGGACCACCACCTTCCCTCAGCTGAGCAGCTTTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTGAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCGGTGAACATGCGTGGCCTGCTTCTGCCTTCGGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCTCATAACATTCTGGAAAATATCCCAACCCCAAATTCCAATTATCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTAGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGAGCAGAATGTTCTGATGAAAGATAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 708 47.46 MSSSSSSSSPTSSTTAAATTTTTTFSQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGEQNVLMKDNGFYASANVGVSHF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 67400673 67402856 + Hsped.06g16510.1 Hepe06g1651 573026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1651 235 Gene3D High mobility group box domain 142 215 IPR036910 -
Hepe06g1651 235 PANTHER PROTEIN YABBY 6-RELATED 35 206 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Hepe06g1651 235 SUPERFAMILY HMG-box 141 190 IPR036910 -
Hepe06g1651 235 FunFam Axial regulator YABBY 142 213 - -
Hepe06g1651 235 CDD HMG-box_SF 151 187 - -
Hepe06g1651 235 Pfam YABBY protein 35 197 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1651 Hepe-Chr6:67400673 Hepe08g0186 Hepe-Chr8:1664329 9.67e-55 dispersed
Hepe10g1628 Hepe-Chr10:53009522 Hepe06g1651 Hepe-Chr6:67400673 2.08e-39 transposed
Hepe06g1154 Hepe-Chr6:60868855 Hepe06g1651 Hepe-Chr6:67400673 1.05e-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55823 PF04690 YABBY 5.50E-71 CL0114 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1651 K25796 - csv:101214748 410.223