Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1651 ATGTCATCCTCTTCTTCTTCTTCTTCTCCTACTTCTTCTACTACTGCTGCTGCTACTACTACCACTACTACCTTTTCTCAGCTGGACCACCACCTTCCCTCAGCTGAGCAGCTTTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTGAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCGGTGAACATGCGTGGCCTGCTTCTGCCTTCGGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCTCATAACATTCTGGAAAATATCCCAACCCCAAATTCCAATTATCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTAGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGAGCAGAATGTTCTGATGAAAGATAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 708 47.46 MSSSSSSSSPTSSTTAAATTTTTTFSQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGEQNVLMKDNGFYASANVGVSHF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 67400673 67402856 + Hsped.06g16510.1 Hepe06g1651 573026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1651 235 Gene3D High mobility group box domain 142 215 IPR036910 -
Hepe06g1651 235 PANTHER PROTEIN YABBY 6-RELATED 35 206 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Hepe06g1651 235 SUPERFAMILY HMG-box 141 190 IPR036910 -
Hepe06g1651 235 FunFam Axial regulator YABBY 142 213 - -
Hepe06g1651 235 CDD HMG-box_SF 151 187 - -
Hepe06g1651 235 Pfam YABBY protein 35 197 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1651 K25796 - - csv:101214748 410.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1651 Hepe-Chr6:67400673 Hepe08g0186 Hepe-Chr8:1664329 9.67e-55 dispersed
Hepe10g1628 Hepe-Chr10:53009522 Hepe06g1651 Hepe-Chr6:67400673 2.08e-39 transposed
Hepe06g1154 Hepe-Chr6:60868855 Hepe06g1651 Hepe-Chr6:67400673 1.05e-97 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1651 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 60.5 1.3e-44 176.4
Hepe06g1154 . 71 225 C2C2-YABBY Transcription Factor Family AT2G45190 55.5 5.6e-40 161.0
Hepe08g0186 . 1 171 C2C2-YABBY Transcription Factor Family AT1G08465 64.4 1.5e-54 209.5
Hepe06g1651 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.9 3.2e-44 175.3
Hepe06g1154 . 23 202 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 1.7e-42 169.5
Hepe09g0669 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 53.3 5.1e-42 167.9
Hepe06g1651 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 1.8e-51 199.5
Hepe06g1154 . 33 223 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 4.6e-47 184.9
Hepe10g1628 . 1 176 C2C2-YABBY Transcription Factor Family AT1G23420 50.3 2.0e-39 159.8
Hepe08g2532 . 10 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.5 4.7e-63 237.7
Hepe09g0669 . 7 177 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 6.1e-63 237.3
Hepe08g0186 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 57.6 1.0e-46 183.3
Hepe06g1651 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 3.7e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55823 PF04690 YABBY 5.50E-71 CL0114 Hepe TF