Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1672 ATGGCATTTTTCTTCACTTCATTTTTCTTCTTCATTTCCATTATTTCAACTTTCTTTCTTCTATCAACTCAACAAATTTCTTCCGCCGTCAACTCCACCACCAAGCGCCGCCATCACCACTGGATCGGACCCACCGGCCACCGTCTTATCAAAGTGGACGTTAACGGCGAGTTTCTCTCCGTCCAAGCCGCCGTCGATGCAGTCCCCGACTATAACACCGTCAACACCGTCATCCGAATCAGCCCTGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGGGGGAAAGAAACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAGTTACGTACTTACAGAACAGCCTCTGTCACAGTTTTTGCTAATTACTTCTCTGCCCGAAACATCACCTTCAAGAATACAGCACCGGCGCCGATGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGTATTTCTGGCGACAAAGCCTATTTTTTCGGGTGCGGATTCTACGGGGCTCAAGATACCCTGTGTGACGATGCCGGCCGCCATTACTTCAAAGAATGCTACATCGAAGGTTCCATTGACTTCATCTTTGGAAATGGTCGTTCCATGTATAAGAATTGCGAGCTGCACTCAATCGCTACTCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTTGCCGCATGAGAAGACCGGGTTCGCTTTCGTCCGGTGCAAGGTGACCGGTTCAGGACCCCTATACGTGGGTCGGGCCATGGGGCAGTACTCGAGAATCGTCTACGCGTATACGTACTTTGACGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCATGTCAGCAACAAAAACAAGACAGTATTTTTTGGAGTATACAAATGCTGGGGACCAGGAGCAAGTAAGGTAAAGGGAGTAACATGGGCAAAGGAGTTGGAGTTTGAAGAGGCTCATCCATTTCTTGTCAAGAGCTTTGTCAATGGCAGGCATTGGATTGCACCCTCTGATGCTTAG 1050 51.43 MAFFFTSFFFFISIISTFFLLSTQQISSAVNSTTKRRHHHWIGPTGHRLIKVDVNGEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNITFKNTAPAPMPGMQGWQAAAFRISGDKAYFFGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKNCELHSIATRFGSIAAQDRNLPHEKTGFAFVRCKVTGSGPLYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVTWAKELEFEEAHPFLVKSFVNGRHWIAPSDA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 67755019 67759638 + Hsped.06g16720.1 Hepe06g1672 573047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1672 349 ProSitePatterns Pectinesterase signature 2. 202 211 IPR033131 -
Hepe06g1672 349 SUPERFAMILY Pectin lyase-like 51 346 IPR011050 -
Hepe06g1672 349 Gene3D - 47 348 IPR012334 -
Hepe06g1672 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 345 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Hepe06g1672 349 FunFam Pectinesterase 45 346 - -
Hepe06g1672 349 Pfam Pectinesterase 52 340 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1672 Hepe-Chr6:67755019 Hepe09g0821 Hepe-Chr9:8035990 7.54e-105 dispersed
Hepe06g1672 Hepe-Chr6:67755019 Hepe10g0628 Hepe-Chr10:7799371 5.76e-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1672 - - - 0.0