Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1713 ATGGGAAAACATGGCCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCGGTATTATGTAATGCGTGTGGATCCCGATGGAGGACAAAAGGAACACTTACAAACTATACCCCTTTGCATGCACGGGCCGGTCCTGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGGTCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTACAGAGTGGTGGATGAAGACACAAGCAATAGATCCAGTTCCGGATCGGCCATATCTAATCCTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCACGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAATCCTCGGTGGAAAAACTAACTAAAGATCTATATAGTATTTTACATGAGCAGAGATCTTCCTGTTTCTCTGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAACAAACAATACTCGGTAAATGAGGTCCATTCCCCCCATCCTGCAACTGTTCTTGTATGTAGTGAAAACAAGGGTATGGATTTTCCAACATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGGACAAATTAAAAGGGATGACTCTCATCATGAAAGTTTACAAATTCTTGGAAACCATAACTCTCCCTTATGTGATGTGGATATAAATGACATTATAAACTTCGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAACAATTAATGAAGTATCTACCACAGGTTGATGTCACTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAATTTAGCTTCCTTCCAACAACTGCTTAGGGAGGGTGTTTTCGACGTTTCCTTCCTTGGAACAAAGACCGAAGACTGCAAGACTCTGAAAAGGCTTGTACTATATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTTAAGAAATGTAAAAATAGTAGCAAAGGATCTTTTCTTTCCTGTGCCAACGCCTCGGTGTCGAGTAACTTCACGAATGTTAAGCGATTGCGTGAGAGCTACAATCAAATTCTTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGACGATGAAGGAAAATAAGGATCCTGGGGAGAGTGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCTACTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGGTCGAATAGTTCGTTCCCTCAGGCCGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTTTTCATTACTAA 1626 43.54 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARAGPDEYEDHRVSRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESTVPSRKRTCVNRPKQSSVEKLTKDLYSILHEQRSSCFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYSVNEVHSPHPATVLVCSENKGMDFPTSRIGKMKNPSGSGVQQGQIKRDDSHHESLQILGNHNSPLCDVDINDIINFGEFARQLTNEEQQQLMKYLPQVDVTEFPETLKSMFDSPYFKENLASFQQLLREGVFDVSFLGTKTEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNSSKGSFLSCANASVSSNFTNVKRLRESYNQILPEVKTIMKSPKRLTMKENKDPGESDGSCFSPRSLFALPTDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLFHY 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 68121264 68127433 + Hsped.06g17130.1 Hepe06g1713 573088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1713 541 CDD ZnF_GATA 6 54 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1713 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1713 541 Pfam Asx homology domain 286 371 IPR028020 -
Hepe06g1713 541 Gene3D - 293 386 IPR038108 -
Hepe06g1713 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1713 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Hepe06g1713 541 MobiDBLite consensus disorder prediction 514 535 - -
Hepe06g1713 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Hepe06g1713 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1713 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Hepe06g1713 541 Gene3D - 4 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1094 Hepe-Chr6:59449297 Hepe06g1713 Hepe-Chr6:68121264 7.32e-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55828 PF13919 ASXH 2.50E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1713 - - - 0.0