Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1721 ATGCACCGTGACCGTCCTGCGCTTGGCGGCGCCGGCGCCGGTGCTTCTTCCAAGTTGGAAGTCACTCCCATCGATCGAAAACGTATCAACGACGTTCTCGATAAGCAGCTCGAACGATCCTCCCCCTCCACTTCTCGCACCGTCATTAACGGCAAGGATAATAATAATAATAATAAGCCCTCTGCTGCGGCTCAGTCGGTCTTGATGACCAACCCACCGTCTGATCAGAGAGACCCCTCTCGCTCTGCCTCTCTCCCTAAGACCAACTGCTCTGAGGAGTCTGAGACTGACAGTGAAGAGTCAGATGTCAGTGGATCTGATGGTGATGACACATCTTGGATTTCATGGTTTTGCAATCTGCGAGGAAATGAGTTCTTTTGTGAAGTGGATGATGACTATATACAAGATGACTTTAATCTTTGTGGGTTAAGCAGCCAAGTTCCATACTATGATTATGCTCTTGATTTGATTCTGGATGTAGAATCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAATTGAATCTGCAGCTGAAATGCTTTATGGTCTAATTCATGCGAGATACATATTGACAAGTAAAGGCATGGCTGCTATGCTGGACAAGTTCAAGAATTATGACTTTGGGAGATGCCCTAGAGTTTACTGCTGTGGGCAACCCTGTCTTCCTGTTGGTCAATCAGACATTCCTAGAACAAGCACCATCAAGATATACTGTCCAAGATGTGAGGATGTTTATTATCCTCGATCGAAGTATCAAGACATTGATGGAGCTTACTTTGGAACTACATTTCCTCACCTCTTCCTGATGACATATGGACACCTTAAGCCATCAAAAGCCGTTCAGGGCTACGTTCCGAGAGTATTTGGATTCAAGATCCACAAGCCATGA 897 45.26 MHRDRPALGGAGAGASSKLEVTPIDRKRINDVLDKQLERSSPSTSRTVINGKDNNNNNKPSAAAQSVLMTNPPSDQRDPSRSASLPKTNCSEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRTSTIKIYCPRCEDVYYPRSKYQDIDGAYFGTTFPHLFLMTYGHLKPSKAVQGYVPRVFGFKIHKP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 68207726 68212040 + Hsped.06g17210.1 Hepe06g1721 573096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1721 298 SMART CK_II_beta_2 112 294 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 MobiDBLite consensus disorder prediction 36 91 - -
Hepe06g1721 298 FunFam Casein kinase II subunit beta 210 283 - -
Hepe06g1721 298 MobiDBLite consensus disorder prediction 21 35 - -
Hepe06g1721 298 Pfam Casein kinase II regulatory subunit 112 294 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PANTHER CASEIN KINASE II SUBUNIT BETA 92 297 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Hepe06g1721 298 Gene3D - 210 283 - -
Hepe06g1721 298 MobiDBLite consensus disorder prediction 1 108 - -
Hepe06g1721 298 SUPERFAMILY Casein kinase II beta subunit 110 297 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 184 205 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 112 128 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 258 275 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 129 143 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 209 230 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 PRINTS Casein kinase II regulatory subunit family signature 231 252 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 105 209 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Hepe06g1721 298 FunFam Casein kinase II subunit beta 105 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1721 K03115 - - csv:101211694 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0393 Hepe-Chr3:5645721 Hepe06g1721 Hepe-Chr6:68207726 3.18e-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84