Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1725 ATGGTGGATTGCAGTTTACCAGTATCGAAGAGAACGAGACTGAGGCGAACAATGGCTGGAGAGGAGCATTTGGAGCAGAGGAAGAAGAGGAGGAAGAAGAATCGGTCGGATTCCGCTAGTGACGACAATGCTCGAGGTCAGATTTCGAGCGATGGAGGTAAGAGGGTTTATGCTTCTGAAAATTCTAGTGTTAATCGTAGAGTGAAGGTGGAGCCTCTGGCTTCTGTTGATAGTGAGGCGGAGAGTGTTGAGGAGATTGATGCTTGTACATTTGGTAGAGAGAGTGGGGATTCGGTCACATTTGTTGATTCTGAGAGTTCTGGGCTGAAGAATGTGAAGGAATTTTACACAAAAGGGGTTAAGAAGGGGAATGCTGATTTAATCGATTTAGAGGATGAGGTGATTTTGATTGATGAGGAGGAGGGGTTTGATTCTGTGAATTCCAACTGTTCTATTTCTAAGTCTGCTGCTGCTGTGAAGGGTGGGGGGTTTGTTTGTGAGTTGGATATTGGAGATGGTAGTAGTGGGTTGATTTCTCCTGGCAAGGGAAAGGGTGCTGTACATATATCTCCCAATAAAAGCGTGGGGGTAAGTAATTGCTCCAACTCTAATGGTTGTGAGAGTGCTGGTTGCTCCTACAGGACTGAGCCTAAGTGTTGTTCTGATGATGTTGCAGATGAGTCCGCTGAATCGGGAGCATCATCAAGTGAAGAGGAGTATGACGACTCGAGTGATGGGAATTATGTATTAGACGAATCAGACCAGCCAATTTCAGAGTCCTCAAGTTCGGATTCCTCTAGTTCAGAAAGTGGGAACAATAATGGAAGTTGCTGTGTAGAAGGAGGAAGTAGAAGGGGAAGAAGGAAAGGGGGAAATTGTATTGAAGGTGGATTTAGAAGGAGGAAAGCTTATGGATTGGACCTATTGGTTGATCTCGATAAGGACGGAATGAACTTCAATTTCAAAAAGGAAAATGTTAAGGTTGGTGAACAGCTTAATTGTGTTGCACGAAGAACTCGCTCACGCTTTGGTTCGAGGGGTGGAAAGATGAATACTGATCTTGGAACTTTCAGTCAGCCACTCTGTATTGACGATGATGAGGAAGGGTCAGATTTTCAGAGTGGTGAGAAAGAATTAGATTCTTCGTCAAAGCATGACATTGGAAATTCTTGTGATAGTGATAGTACTCCTGATGATGAAATTTACAAGCCAAGGGCCTGGAGTAGTAGTAAAAAGAGAAATCAGTTCAACAATCAAAGTGATGATGATATCTTATCGGAAAAAAAAGATGATGATACAAGCAAGGTTGAGAGTTTTCATGAGGGGAGTAAACTTTGGAATAGAAAAAGTTTATCTAAAACAAATAAACGCAACCAGAGTAAAGATTGTGAAGATTTTCATAAGGTTCACCCAAAGAATTGCCATGGGTTTGACAATATTATTAAAACAAAACACTACCAGAGTGAAGATTGTGAGGATTTTCAGAAGGTTCACCCAAAGAATTGCCATGGGTTTGACAATATTATTAAAACAAAACACAGCCAGAGTGAAGATTGTGAGGATTTTCAGAAGGTTCACCCAAAGAATTTCCATGGCTTTGACAATATTATTAAAACAAAACGCAACCAGAGTGAAGATTGTGAAGATTTTCAGAAGGTTCGCCCGAAGAATTTCCATGGTTTTGACGGTACTATTAAAACAAAAGGCCATAGGGCCAGTACGCGCAAAAGTCTTGATGTTTTCAATATTCTTGTAGATTCCATAATTGCAGATAGAGAACTGCCTTCAGATGAGTTAGATCTTCCTACAGGTCACTGTTGTTCTGAGTTTCGTCTTCCTTTGAAGTTCAATTTTGGATATAAGGAATCACATCTTCCAGAGAAGTCAGAGGAAGAAAAAGAATTGGACAAACTCTGGGCAGAGCTCGACTTTGCTCTCAGATCCTGCGAGATTGGTGTGATGGATTCTAATACAGTTGAAAACGAAGAGGCCTTTCCTTCAAAGCTTGAGCAAGTGGATTTTTGTCTTCGCGGTGATCATCATCTCATACTTGATGAACAAATTGGACTTAGATGCACATGTTGTTCATATGTCAAACTGGAAATAAAAAATATTGTACCCTCTTTTGATACAAATCCACATGGAAAGTCACGGAAGAGGGAATCTGGCTCAGTTGAGCAGGTTAGATTTGATGACCTTCAACAGGATTCTGATTGTGACCCTCATGACGGATCTGATTCACAAGCTCATTTTGGACGCACGGTGTGGGATATCATTCCCGGTATAAGGGATAGCATGTACCCACATCAGCGTGAAGGCTTTGAATTTATTTGGAAAAATATAGCTGGAGGAATTTATCTTGATGAATTAAGAGAACGAAACAGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGCTTTTCTTCAGACATACATGGAATTAAATCCGACATGCCGGCCTATGATTATTGCACCTCGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGAGTTCACTCTCAAGGAGGATATTTCAGCTGTTAAGTTATTGATGCAAGCTTCTCCATCACGACAAAATCTGGACGACGTACGGGTTGTAAAACTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGACTTAGTTACAGATTGTTTGAGATACTCGCTGGAGTTAAGAAGAATTCTAAATATAATGAAGTAGCGAATATCCTTTTGGAGCTTCCTGATCTTGTGGTCTTTGATGAAGGGCACATACCACGCAACAATGATAGTCTTATTTGGATGGCCTTGTTTAACATTAAAACAGAAAGGCGCATCATCCTCTCTGGAACTCCGTTCCAGAATAATTTTACTGAGTTTTATAATACACTAAGGCTGGTGAGGCCAAAGTTTGCAGACGAAAGTAATCTTGGAAGCGATGAATGCCTAGATAAGAAGCGTGGACGTCCAAAAAATAGCTCAAGAGGAAAGTGGGACCTTTTGATTAATTCCATTGGCAAAACTTCTGAAGATAGACGAGAAAATGATGAATTGAAACAAATCAGAACCATGATCAATCCATTTGTGCATGTATACCGGGGCCACATACTACAAGAGAAACTTCCGGGGTTGAAGAAATCTATAGTTATATTACAGCCAGCAGAGCTGCAGAAGAGTTATCTTGAGAGCATTCGAAGGAAGAATTCTTTTGAAGTGGAATATGCTGAGTCCTTGATCTCCGTACACCCTTCCCTGATGCTGAAATGTGATAAAGGAGATTTTGCTATTGACAAGGATATGTTAGAGAGAGTTAGATTGAATCCTGAACTAGGAGTGAAAATACAGCTTCTCCTGGAAATTATACGTCTGAGTGAAGCTTTGAAAGAAAAAGTTTTGGTTTTCAGCCAATACCTTGAACCATTGTCCTTTATAGAAGAGCATCTTAAGGCTCGTTTTAATTGGAATGATGGGACAGAGTTGTTTCATATGGATGGAAAAGCCGATATAAAGAAACGACAAGTACTAATAAATACCTTTAACGATCCAACAAGTGAAGTTAGGGTATTGCTTGCATCAACGAAGGCTTGTTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCATCAGTGGAAAGGCAAGCTATATGCCGTGCATATAGACTTGGCCAGAAAAAAGTTGTTTATGTCTATCATCTCATTACCTCTGGGACAAGGGAAGAGGAGAAATACAGTCGACAAGTGGAAAAAGATCGGTTGTCGGAGTTAGTTTTCTCTCCTGAACAAAGCAGTAACCAAGTAAAACTACCATCCACAGATCTGGACGACAGAATTTTGGAAGCAGTACTTGAACATGAAAAGCTTAAAAATATATTCCAAAAGATAGCGTACCAATCAAGGGAGTCTACCATGAATGGGAATTTTGGCTTGGCCGACCAGGAGTGA 4029 40.68 MVDCSLPVSKRTRLRRTMAGEEHLEQRKKRRKKNRSDSASDDNARGQISSDGGKRVYASENSSVNRRVKVEPLASVDSEAESVEEIDACTFGRESGDSVTFVDSESSGLKNVKEFYTKGVKKGNADLIDLEDEVILIDEEEGFDSVNSNCSISKSAAAVKGGGFVCELDIGDGSSGLISPGKGKGAVHISPNKSVGVSNCSNSNGCESAGCSYRTEPKCCSDDVADESAESGASSSEEEYDDSSDGNYVLDESDQPISESSSSDSSSSESGNNNGSCCVEGGSRRGRRKGGNCIEGGFRRRKAYGLDLLVDLDKDGMNFNFKKENVKVGEQLNCVARRTRSRFGSRGGKMNTDLGTFSQPLCIDDDEEGSDFQSGEKELDSSSKHDIGNSCDSDSTPDDEIYKPRAWSSSKKRNQFNNQSDDDILSEKKDDDTSKVESFHEGSKLWNRKSLSKTNKRNQSKDCEDFHKVHPKNCHGFDNIIKTKHYQSEDCEDFQKVHPKNCHGFDNIIKTKHSQSEDCEDFQKVHPKNFHGFDNIIKTKRNQSEDCEDFQKVRPKNFHGFDGTIKTKGHRASTRKSLDVFNILVDSIIADRELPSDELDLPTGHCCSEFRLPLKFNFGYKESHLPEKSEEEKELDKLWAELDFALRSCEIGVMDSNTVENEEAFPSKLEQVDFCLRGDHHLILDEQIGLRCTCCSYVKLEIKNIVPSFDTNPHGKSRKRESGSVEQVRFDDLQQDSDCDPHDGSDSQAHFGRTVWDIIPGIRDSMYPHQREGFEFIWKNIAGGIYLDELRERNSLNNGSGCIVSHAPGTGKTRLTIAFLQTYMELNPTCRPMIIAPRSMLLTWEEEFLKWNVGIPFHNLNKREFTLKEDISAVKLLMQASPSRQNLDDVRVVKLFSWKKEKSILGLSYRLFEILAGVKKNSKYNEVANILLELPDLVVFDEGHIPRNNDSLIWMALFNIKTERRIILSGTPFQNNFTEFYNTLRLVRPKFADESNLGSDECLDKKRGRPKNSSRGKWDLLINSIGKTSEDRRENDELKQIRTMINPFVHVYRGHILQEKLPGLKKSIVILQPAELQKSYLESIRRKNSFEVEYAESLISVHPSLMLKCDKGDFAIDKDMLERVRLNPELGVKIQLLLEIIRLSEALKEKVLVFSQYLEPLSFIEEHLKARFNWNDGTELFHMDGKADIKKRQVLINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSELVFSPEQSSNQVKLPSTDLDDRILEAVLEHEKLKNIFQKIAYQSRESTMNGNFGLADQE 1342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 68224331 68231836 - Hsped.06g17250.1 Hepe06g1725 573100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 224 287 - -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 416 439 - -
Hepe06g1725 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1290 IPR027417 -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 232 248 - -
Hepe06g1725 1342 Gene3D - 1062 1337 IPR027417 -
Hepe06g1725 1342 SMART ultradead3 762 1008 IPR014001 -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 1 71 - -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 54 68 - -
Hepe06g1725 1342 Gene3D - 741 1022 IPR038718 -
Hepe06g1725 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1303 IPR001650 -
Hepe06g1725 1342 Pfam Helicase conserved C-terminal domain 1133 1251 IPR001650 -
Hepe06g1725 1342 CDD SF2_C_SNF 1130 1262 IPR049730 -
Hepe06g1725 1342 SMART helicmild6 1162 1251 IPR001650 -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 365 439 - -
Hepe06g1725 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 793 990 IPR014001 -
Hepe06g1725 1342 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1327 IPR044567 GO:0080188(InterPro)
Hepe06g1725 1342 Pfam SNF2-related domain 769 1096 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Hepe06g1725 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 993 IPR027417 -
Hepe06g1725 1342 MobiDBLite consensus disorder prediction 249 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1725 K10875 - - csv:105435045 1476.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0677 Hepe-Chr1:68987210 Hepe06g1725 Hepe-Chr6:68224331 4.29e-99 dispersed
Hepe06g1725 Hepe-Chr6:68224331 Hepe08g0991 Hepe-Chr8:9382911 2.17e-87 dispersed
Hepe06g1725 Hepe-Chr6:68224331 Hepe03g0702 Hepe-Chr3:17344512 4.16e-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55829 PF00176 SNF2_N 1.20E-19 CL0023 Hepe TR