Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1781 ATGCTCTGCTTGTTTGTTTCCTTCAATTTTTCAGGACCATTCAATTGGGGTGTCATCTTCAGCTCGAATCGCTTGTCTAGGACTGGAAATCATGACCCAAATGAGGAATTTGAAGATAATCACAACCCGTCTCTTCACGAGCCGTGGCATGTCGCCACAACTGGCTTGGATGAGGCACTGATCAAGTCCATTACGGTTTGTAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCAATGCATTGATACTTGGCTCAAATCGCACTCCAATTGCCCGTTGTGTCGTGCGAATATCGTCTCGTTCAACGCTTCTTCTCCAGTTCAACTGCCTGCAACCATTTCAAATCCCATAACTAGTGAGGCAATCCCAGAGACTTCTCAGGAAAACGACCATGAGGCTGTTTCACAAGAATTTGGAAGAAGTTTAGGCAATGACGATGTGATGCAAGCATCTAATTGTTCGAAAAACTCGGTTCGCGCTCTCAGTGACCTCGGAAATCTGGAGAAAAGAGACACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCGGATGTTCTACGTCTAAATGAAGATGAATTTGGAGTCATTGATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAACATTCAATGGGAGAAGACAGCAAGTCAAGTCATAGAAAAAGAATCTTGCAATGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTCTCAAGTGGAAGATTTTTTCTCACTAGGCATGGAAGAGAACACAGGGGAATTGCCCCTGTCTGA 915 43.72 MLCLFVSFNFSGPFNWGVIFSSNRLSRTGNHDPNEEFEDNHNPSLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSFNASSPVQLPATISNPITSEAIPETSQENDHEAVSQEFGRSLGNDDVMQASNCSKNSVRALSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCSQNHIIIADVLRLNEDEFGVIDEAGSSGDVGSSKHSMGEDSKSSHRKRILQCVMSPVSMKRSFSSGRFFLTRHGREHRGIAPV 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 68893385 68894921 + Hsped.06g17810.1 Hepe06g1781 573156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1781 304 SUPERFAMILY RING/U-box 69 129 - -
Hepe06g1781 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 131 IPR013083 -
Hepe06g1781 304 FunFam RING-H2 finger protein ATL54 56 129 - -
Hepe06g1781 304 Pfam Ring finger domain 80 123 IPR001841 -
Hepe06g1781 304 PANTHER RING-H2 FINGER PROTEIN ATL16 15 270 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Hepe06g1781 304 MobiDBLite consensus disorder prediction 245 267 - -
Hepe06g1781 304 CDD RING-H2_EL5-like 80 123 - -
Hepe06g1781 304 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Hepe06g1781 304 SMART ring_2 81 122 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1781 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0336 Hepe-Chr2:3208708 Hepe06g1781 Hepe-Chr6:68893385 1.80e-13 dispersed
Hepe03g0402 Hepe-Chr3:5746647 Hepe06g1781 Hepe-Chr6:68893385 1.17e-42 dispersed
Hepe06g1781 Hepe-Chr6:68893385 Hepe10g0470 Hepe-Chr10:5431431 3.41e-40 dispersed
Hepe06g1781 Hepe-Chr6:68893385 Hepe05g1796 Hepe-Chr5:68222236 9.81e-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68