Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1799 ATGGAGTTATTTCCAGCACAGCCAGATTTGTCACTTCAAATTAGTCCTCCAAATACAAATAAACCCTCTTCCACTTGGAGAAGAACAACATCCTCACAAGAAGAAGTTGTTGATTTGGGGTTTTGGAATAATCTCACTTTGGAGTCCTCTAAATCCACTCCTAAACACCACCCTAATCTTCATAATCACTCTTATTTTGACCTCTCTCTCTCAAACTTCACCCAAATTAACCATCATCAATATCCTAATAATATTGCTCCTCCAAATCATCATCATCTTCATCATCTTCATCCTCATCACCATCACCATCCCGCTCTCAATAGCGGTGCTCACCTTTTCGAAACCCTAAACAAAACCCACCACCACCACCGACCCGCTGCGATTTTCCACCACAATCCACCGTCGCCGCTCGAGCCTCCACCGCCGCCCCCGTTCCCAGGGCAGACGAATGGGCAAGACTTGGGCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCATCAGCCAACAATTAACCCCGCCGGCAACAGCGGCGCCGTCGCTTCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGAAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTGGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGGAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGTAATATAGAAGATATAATATTTGACATTCAAAAGCCAACCATTGGAAGGCAAAATGATCACTCACCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGAATACCATGCCCTGTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCTAATGATTCTTCTAAGGACCTTTCTTCGTCGCTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAGCAGATCTTTGTGGAGTGACAAATAATCCTCAGAAACCTAATTTGGAATTCACATTAGGAAGGTCAATTTGA 1191 45.59 MELFPAQPDLSLQISPPNTNKPSSTWRRTTSSQEEVVDLGFWNNLTLESSKSTPKHHPNLHNHSYFDLSLSNFTQINHHQYPNNIAPPNHHHLHHLHPHHHHHPALNSGAHLFETLNKTHHHHRPAAIFHHNPPSPLEPPPPPPFPGQTNGQDLGFLRPIRGIPVYHHQPTINPAGNSGAVASSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAGASSGQSDLYENASSGDTSNIEDIIFDIQKPTIGRQNDHSPVQQTRQNPHQDKEYHALWSNSSREAWLHGLPNDSSKDLSSSLENDMDPKCSNNERLSEISSSADLCGVTNNPQKPNLEFTLGRSI 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69069954 69074074 + Hsped.06g17990.1 Hepe06g1799 573174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1799 396 MobiDBLite consensus disorder prediction 1 31 - -
Hepe06g1799 396 Pfam Myb-like DNA-binding domain 211 262 IPR001005 -
Hepe06g1799 396 MobiDBLite consensus disorder prediction 303 318 - -
Hepe06g1799 396 FunFam Myb family transcription factor 208 266 - -
Hepe06g1799 396 MobiDBLite consensus disorder prediction 11 31 - -
Hepe06g1799 396 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677(InterPro)
Hepe06g1799 396 SUPERFAMILY Homeodomain-like 207 263 IPR009057 -
Hepe06g1799 396 Gene3D - 209 266 - -
Hepe06g1799 396 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 395 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Hepe06g1799 396 MobiDBLite consensus disorder prediction 302 323 - -
Hepe06g1799 396 MobiDBLite consensus disorder prediction 340 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1799 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1799 Hepe-Chr6:69069954 Hepe10g0690 Hepe-Chr10:9119845 2.71e-33 dispersed
Hepe02g1065 Hepe-Chr2:13232856 Hepe06g1799 Hepe-Chr6:69069954 1.09e-48 transposed
Hepe02g2403 Hepe-Chr2:69626014 Hepe06g1799 Hepe-Chr6:69069954 7.61e-33 transposed
Hepe07g2334 Hepe-Chr7:67687470 Hepe06g1799 Hepe-Chr6:69069954 7.62e-34 transposed
Hepe06g0993 Hepe-Chr6:57694093 Hepe06g1799 Hepe-Chr6:69069954 1.30e-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55841 None None None None Hepe TF