Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1808 ATGATGGGGACATCAGTCCTTAACAACAACCAGAATTTATTGCGCTCAAAAGATTTACCACAGAGTTTAGAGTTCAGTTTGAAGCAGAAGGAGCAAGATTATTTGTGCCTTCTGAAGAAATGCAAGAGCTTACAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTTTGGGATTCTTTCTGCTCAAGCAGTCTTTTGGCCACTTGTGCTCTCTCAAATTGGACCAGTATGGACTATGCCTGCTCCATTTTCCAGCAATTGGATGAACCTACCACATTTCATTTCAACACAATGATCAGAGGGCATGTTAACAACATGAACTTTGAAAACGCGCTATATCTATATGATGAAATGCTTCAAAGAGAAGTTGAACCCGACAACTTCACGTACCCGGCAGTTCTCAAGGCTTGTGCCCGGTTAGCAGCGATCGAGGAAGGAATGCAGATTCATGGTCATATATTCAAGCTAGGTCTGGAAGTTGATCTATTTGTACAGAATAGCTTAATCAACATGTATGGGAAGTGTCGGGATATCGGACTGTCTTGTGCTATTTTTCGACGTATGGAGCAAAAGAGTGTGGCTTCTTGGAGTGCCATAATTTCAGCTCATGCTAGTCTTGGATTGTGGTGGGAATGTTTGGTGTTATTTGAGGAGATGAGTAGAGAAGGATGTTGGAGGGCTGAGGAAAGCATATTAGTCAGTGTGCTCTCTGCTTGCACCCATCTGGGTGCCCTTCATTTAGGAAGATGTGCCCATGGTTCTCTGTTGAGGAACATTACTGAACTAAATGCTGCAGTTATGACTTCCTTAATGGATATAAGTACACCGAAACAAGTCTGCTACCACCTCGTCTATTTAAAGAATATTAATCAGAATACAAGTATATCATTGGCAATATCAACTGGTCAAGAATAA 927 41.1 MMGTSVLNNNQNLLRSKDLPQSLEFSLKQKEQDYLCLLKKCKSLQEFKQVHVQILKLGLFWDSFCSSSLLATCALSNWTSMDYACSIFQQLDEPTTFHFNTMIRGHVNNMNFENALYLYDEMLQREVEPDNFTYPAVLKACARLAAIEEGMQIHGHIFKLGLEVDLFVQNSLINMYGKCRDIGLSCAIFRRMEQKSVASWSAIISAHASLGLWWECLVLFEEMSREGCWRAEESILVSVLSACTHLGALHLGRCAHGSLLRNITELNAAVMTSLMDISTPKQVCYHLVYLKNINQNTSISLAISTGQE 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69175764 69177872 - Hsped.06g18080.1 Hepe06g1808 573183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1808 308 Gene3D Tetratricopeptide repeat domain 9 146 IPR011990 GO:0005515(InterPro)
Hepe06g1808 308 Gene3D Tetratricopeptide repeat domain 147 287 IPR011990 GO:0005515(InterPro)
Hepe06g1808 308 Pfam PPR repeat family 94 143 IPR002885 -
Hepe06g1808 308 NCBIfam pentatricopeptide repeat 199 228 IPR002885 -
Hepe06g1808 308 NCBIfam pentatricopeptide repeat 99 130 IPR002885 -
Hepe06g1808 308 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 141 - -
Hepe06g1808 308 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 21 148 - -
Hepe06g1808 308 Pfam PPR repeat 170 196 IPR002885 -
Hepe06g1808 308 Pfam PPR repeat 199 228 IPR002885 -
Hepe06g1808 308 FunFam Pentatricopeptide repeat-containing protein At4g14850 150 251 - -
Hepe06g1808 308 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Hepe06g1808 308 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1808 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1808 Hepe-Chr6:69175764 Hepe02g1984 Hepe-Chr2:39657707 1.04e-41 dispersed
Hepe06g1808 Hepe-Chr6:69175764 Hepe02g2018 Hepe-Chr2:44699828 1.04e-41 transposed
Hepe06g1808 Hepe-Chr6:69175764 Hepe02g1983 Hepe-Chr2:39605306 1.04e-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187