Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1830 ATGTTTAATTTCATCATCTTCTTCTTCTTCTTCTTCTTGATTCTCTTACCTCCCTGCAAATCCTCTCAAATTCCTGCCACTACCCGCAGATTGCTCCACCAGCCTTTTTTCCCACTTGATTCTGTTCCTCCGGCGTCTCTGCCGTCTCCTCCGGTGCCCCCACCGCCGAATCCCAAGTACCCATTTTCCACTACCCCTCCTACTACTCCTGATGGGTCTCCATTCTTTCCGACGTATCCCGGAACCCCTCCTCCTCCCACGCCGGCGAGTTTTGCATCGTTTCCGGCGAATATTTCTTCTCTCATTCTCCCTACTTCGTCTCAGTCTGGTTCCACTTCCAAGAAGGTTGTTCCGGTGGTCATTGCGGCGGTTGTTTCCGCCGTTTTGGTCGTCTGCATTGCCGGGTTTTTGTACTGGCGGCGGCGGCGTGGGCGTGGGTTGGGTGACGATAAGACGTTCAGATCCGAGAATAGTAGCCGGTTGTGTCCGGTTCCGAATGTTGAAGTCGGTAGTGGAATCCTCCCTAAGTTGAGGCATCCTTCTGCTACCAGCTCTGAGTTTCTGTATTTGGGTACTCTTGTGAACTCGAGAGCGATCGACGATCGTTCCGCTCGTGTTGCTGATCCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGCTCAACTTCGGTCGGTCGACTGAGAAGCATAACTATGGAAATGGAGAAGCGAGGTCGATGGGAGATGAAGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCTAATGGCTCGGGATCTCGGAGAGTGCTCGCAACAATGGCGGCTGAAGATTTGCTTGGGAAAACCAGCGATTCGAGCTCCACTTCGTATTCCACATCCAGCGGTTCGGTTTCGCCGGCGAGATCACGTTCTAAGAGTCTCTCTCTTTCTCCACCGGCGAGCTTGAGCCCTAGAAGATCCGTTCATAACGAAACTTCTAATTTCTCTGTTTCTGCTACTGTAGCGACGGAGCAGCATTCGCCACCGTTAACGCCGCCGCTTTCCCATGGCGGAGTGGAATCAGACGACGGCTGTAAATCTCATTGCCCTTCTCCAATGCGTTTATCGACGGAGAAGGTTCCGGAGAAGAGCTCCACCGCATCTTCTTCCCGGAGATTTTCTAATGTTTCAGTTCACAGTGCGATGTTCCCAATTTCAACAACCGATAAAGGTTTAGTTAATCATCACGATGATTTAAACAATAATCACGAAGAATCTCATAATTCAGATCCAGACGAGCAATTTCCTCCTTCTCCTTCTCTATCTCCTCTTTCAGATGGAATTTTAGGGCCAATTCAGATTCAATTCCCCACAGTTTCAACCATTCCCGATTCGGATTCCGATTCAAAACTTAAGCAATTTTCTTACTCTTTCACTTCATCATCACCTTCATCATCACCGGAGAGAGTAATTTTGGACTCATCTCCGTCAAGGGCATCCATTATTTCAGATCGAAACAGGTCATTTCCACCATCACCGGAGAGAATTGTGATGAGTGATTCAGATTCATCAAAGAAAACTTCCGACCATTTTGATCAAGATGTGCAATCTTCTTCAGCTGATATCAATATCACTGATGTGGGTCGACTGCAATCTCCTTCAGGCGCACCCGCAGCTCCTCCTCCGCCTCCACCGCCGCCGCCACCGGCAGCAGCCCATCTGCCAGTACGTTGGGAATTGCCCATTTCTCCATCAACACCAATGGACCAATCCATTCCAAGGGCACCTCCTTCATTAGTGCCTCCATTAAGGCCATTCATAATGGAGAATGTGAAGAATGTTTCCCCCAGTCAATTGCCTTCCTGCAAAAGCAATGGTACTGAAGCAACTGAAGAAACCCCCAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCAAGCTCTGATCGTGAAATGGTGTGGGATCAACTCAGATCAAGCTCTTTTAAAGTGAATGAGGAAATGATTGAAACTCTGTTTGTTGTGAACACTTCCAACTCGAAGGAGACAACTCCGCGCCCTATGCTACTTACTCCTAACCAAGACATCGGAGTTCTCGATCCCAAAAAGTCGCAGAACATCGCAATTGCACTGCGAGCGCTTAATGTGACCTTAGAAGAAGTTTGTGAAGCCCTTTTAGAAGGTAATGCAGATGCACTTGGAACAGAGCTACTTGAAAGTTTATTGAAAATGGCTCCAACAAAAGAAGAAGAACGTAAACTAAAGGCATGCAAGGATGTCTCACCTACCAAGCTTGGACCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGGTGCAATGCTTTACATGGCAAATTTCGAGTCCGAGGTTGAGTACCTAAAGAAATCGTTCGAAAATCTCGAGACTGCTTGCGAAGAATTGAGGAATAGCAGGATGTTCTTGAAACTCTTGGAAGCTGTACTCAAGACCGGTAACCGTATGAATGTTGGCACCAACCGTGGCGATGCCCACGCCTTCAAACTCGACACGCTTCTGAAGCTCGTTGATGTCAAGGGTGCAGATGGAAAAACCACTCTTCTGCATTTTGTTGTACAAGAAATCACAAGAAGTGAAGGAGCTCGTCTTTGTGGTGGCACAAGTCAAGCACCAAACTCCAACCCGATCGATGATGTCAAATGCAGGAAACTCGGCCTGCAAGTTGTTTCAGGTCTCAGCTCAGAGCTCACCAACGTAAAGAAGGCAGCTTCAATGGATTCCGACGTGCTCAGCGGCGAGGTCATCAAGCTCTTTAGAGGACTCGACAACATCAGGGAGGCTCTACGTTTAAACGAAGCAGGCGGGCCAAACGAAAGCACAGAAAAGTTCTCAGAGTCAATGAGCAGATTCTTGAAAACAGCAGAAGAGGACATCATCAGAATCCAAGCCCATGAAAGTGTTGCTTTATCTCTAGTAAAGGAGATCACAGAGTACTTCCATGGCAACTCTGCCAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGATTTTCTAACAACTTTGGATGGAGTCTGCAAAGAAGTCGGGATGATAAACGAGCGGACGATCGTAAGTTCGGCACATAAATTTCCAGTTCCAGTGAATCCAACATTACCACAAGCATTTCTAGCTCATCATAGAGTGCAGAAATACAATTCATCTGATGAAGAAGGTGAATAA 3207 47.52 MFNFIIFFFFFFLILLPPCKSSQIPATTRRLLHQPFFPLDSVPPASLPSPPVPPPPNPKYPFSTTPPTTPDGSPFFPTYPGTPPPPTPASFASFPANISSLILPTSSQSGSTSKKVVPVVIAAVVSAVLVVCIAGFLYWRRRRGRGLGDDKTFRSENSSRLCPVPNVEVGSGILPKLRHPSATSSEFLYLGTLVNSRAIDDRSARVADPRPLDSPELHPLPPLNFGRSTEKHNYGNGEARSMGDEEEEEFYSPKGSLGANGSGSRRVLATMAAEDLLGKTSDSSSTSYSTSSGSVSPARSRSKSLSLSPPASLSPRRSVHNETSNFSVSATVATEQHSPPLTPPLSHGGVESDDGCKSHCPSPMRLSTEKVPEKSSTASSSRRFSNVSVHSAMFPISTTDKGLVNHHDDLNNNHEESHNSDPDEQFPPSPSLSPLSDGILGPIQIQFPTVSTIPDSDSDSKLKQFSYSFTSSSPSSSPERVILDSSPSRASIISDRNRSFPPSPERIVMSDSDSSKKTSDHFDQDVQSSSADINITDVGRLQSPSGAPAAPPPPPPPPPPAAAHLPVRWELPISPSTPMDQSIPRAPPSLVPPLRPFIMENVKNVSPSQLPSCKSNGTEATEETPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFVVNTSNSKETTPRPMLLTPNQDIGVLDPKKSQNIAIALRALNVTLEEVCEALLEGNADALGTELLESLLKMAPTKEEERKLKACKDVSPTKLGPAEKFLKAVLDVPFAFKRVGAMLYMANFESEVEYLKKSFENLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEITRSEGARLCGGTSQAPNSNPIDDVKCRKLGLQVVSGLSSELTNVKKAASMDSDVLSGEVIKLFRGLDNIREALRLNEAGGPNESTEKFSESMSRFLKTAEEDIIRIQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTTLDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFLAHHRVQKYNSSDEEGE 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69391004 69395749 + Hsped.06g18300.1 Hepe06g1830 573205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 369 385 - -
Hepe06g1830 1068 SMART it6_source 619 1032 IPR015425 -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 524 541 - -
Hepe06g1830 1068 Pfam Formin Homology 2 Domain 621 1017 IPR015425 -
Hepe06g1830 1068 SUPERFAMILY Formin homology 2 domain (FH2 domain) 551 1028 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 47 74 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 233 252 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 546 564 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 402 422 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 467 564 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 467 498 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 278 341 - -
Hepe06g1830 1068 Gene3D Formin, FH2 domain 614 1026 IPR042201 -
Hepe06g1830 1068 ProSiteProfiles Formin homology-2 (FH2) domain profile. 619 1043 IPR015425 -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 399 440 - -
Hepe06g1830 1068 PANTHER FORMIN-RELATED 9 1064 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 204 263 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 607 627 - -
Hepe06g1830 1068 Coils Coil 784 811 - -
Hepe06g1830 1068 MobiDBLite consensus disorder prediction 278 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1830 K28090 - - csv:101211678 1526.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0233 Hepe-Chr1:35827091 Hepe06g1830 Hepe-Chr6:69391004 3.35e-184 dispersed
Hepe06g1830 Hepe-Chr6:69391004 Hepe10g1418 Hepe-Chr10:50844336 3.42e-159 dispersed
Hepe06g1830 Hepe-Chr6:69391004 Hepe09g1587 Hepe-Chr9:43697963 2.72e-103 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1830 . 185 1049 FH2 protein (formin) Gene Family AT3G25500 51.9 7.5e-191 664.8
Hepe01g0233 . 487 933 FH2 protein (formin) Gene Family AT3G25500 67.1 5.3e-160 562.4
Hepe10g1418 . 462 884 FH2 protein (formin) Gene Family AT3G25500 63.7 1.4e-141 501.1
Hepe09g1587 . 495 898 FH2 protein (formin) Gene Family AT3G25500 50.8 1.1e-101 368.6
Hepe06g1830 . 623 1066 FH2 protein (formin) Gene Family AT2G43800 60.1 4.4e-139 492.7
Hepe10g1418 . 462 903 FH2 protein (formin) Gene Family AT2G43800 55.3 1.2e-125 448.0
Hepe08g0488 . 494 628 FH2 protein (formin) Gene Family AT4G15200 75.2 1.2e-47 188.0
Hepe01g1315 . 469 613 FH2 protein (formin) Gene Family AT4G15200 59.5 8.3e-41 165.2
Hepe08g1598 . 1 179 FH2 protein (formin) Gene Family AT1G24150 54.2 4.8e-45 179.5
Hepe01g1315 . 470 905 FH2 protein (formin) Gene Family AT5G54650 65.3 1.1e-155 547.7
Hepe08g0488 . 491 947 FH2 protein (formin) Gene Family AT5G54650 60.0 3.0e-148 523.1
Hepe06g1830 . 622 1024 FH2 protein (formin) Gene Family AT5G54650 50.4 3.6e-101 366.7
Hepe10g1418 . 29 903 FH2 protein (formin) Gene Family AT5G67470 56.8 4.6e-229 791.6
Hepe01g0233 . 494 929 FH2 protein (formin) Gene Family AT5G67470 62.2 1.8e-132 470.7
Hepe06g1830 . 599 1066 FH2 protein (formin) Gene Family AT5G67470 58.2 2.2e-130 463.8
Hepe09g1587 . 495 902 FH2 protein (formin) Gene Family AT5G67470 50.4 6.6e-103 372.5
Hepe10g1681 . 344 818 FH2 protein (formin) Gene Family AT1G59910 50.9 5.0e-122 436.0
Hepe06g1830 . 643 1025 FH2 protein (formin) Gene Family AT5G48360 51.9 5.0e-99 359.4
Hepe10g1418 . 466 860 FH2 protein (formin) Gene Family AT3G05470 51.4 3.4e-104 376.7
Hepe06g1830 . 625 1039 FH2 protein (formin) Gene Family AT3G05470 50.1 1.5e-99 361.3
Hepe06g1825 . 948 1259 FH2 protein (formin) Gene Family AT1G42980 50.8 3.0e-68 255.8
Hepe08g1059 . 153 321 FH2 protein (formin) Gene Family AT1G42980 55.9 7.7e-40 161.4
Hepe06g1825 . 1 1266 FH2 protein (formin) Gene Family AT1G31810 66.4 0.0e+00 1216.4
Hepe08g1059 . 72 321 FH2 protein (formin) Gene Family AT1G31810 82.5 2.0e-110 397.9
Hepe09g0095 . 1418 1739 FH2 protein (formin) Gene Family AT5G07650 70.8 2.4e-125 446.8
Hepe07g2489 . 989 1308 FH2 protein (formin) Gene Family AT5G07650 67.8 9.2e-117 418.3
Hepe01g1968 . 1250 1580 FH2 protein (formin) Gene Family AT5G07650 61.6 1.4e-109 394.4
Hepe06g1825 . 932 1263 FH2 protein (formin) Gene Family AT5G07650 59.9 1.2e-108 391.3
Hepe09g0582 . 885 1204 FH2 protein (formin) Gene Family AT5G07650 61.4 3.9e-107 386.3
Hepe08g1059 . 140 321 FH2 protein (formin) Gene Family AT5G07650 61.7 1.1e-58 225.3
Hepe09g0095 . 1345 1729 FH2 protein (formin) Gene Family AT5G07770 67.1 2.1e-137 486.5
Hepe07g2489 . 905 1307 FH2 protein (formin) Gene Family AT5G07770 60.9 4.6e-129 458.8
Hepe01g1968 . 1191 1579 FH2 protein (formin) Gene Family AT5G07770 57.9 6.2e-118 421.8
Hepe06g1825 . 868 1257 FH2 protein (formin) Gene Family AT5G07770 55.5 1.7e-115 413.7
Hepe09g0582 . 808 1196 FH2 protein (formin) Gene Family AT5G07770 56.2 2.4e-114 409.8
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT5G07770 57.6 1.1e-71 268.1
Hepe01g1968 . 1166 1580 FH2 protein (formin) Gene Family AT3G32400 73.6 7.2e-168 587.4
Hepe09g0582 . 781 1203 FH2 protein (formin) Gene Family AT3G32400 64.3 2.0e-146 516.2
Hepe06g1825 . 868 1262 FH2 protein (formin) Gene Family AT3G32400 65.7 8.3e-140 494.2
Hepe09g0095 . 1345 1739 FH2 protein (formin) Gene Family AT3G32400 63.0 1.1e-136 483.8
Hepe07g2489 . 882 1304 FH2 protein (formin) Gene Family AT3G32400 58.0 2.4e-131 466.1
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT3G32400 68.1 1.7e-92 337.0
Hepe09g0582 . 1 1203 FH2 protein (formin) Gene Family AT2G25050 53.4 4.2e-291 998.0
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT2G25050 62.5 1.2e-88 325.5
Hepe09g0095 . 1346 1739 FH2 protein (formin) Gene Family AT5G07780 61.3 6.2e-121 431.4
Hepe07g2489 . 913 1303 FH2 protein (formin) Gene Family AT5G07780 57.5 1.7e-110 396.7
Hepe01g1968 . 1192 1580 FH2 protein (formin) Gene Family AT5G07780 53.8 9.0e-104 374.4
Hepe06g1825 . 869 1258 FH2 protein (formin) Gene Family AT5G07780 52.7 4.5e-103 372.1
Hepe09g0582 . 815 1196 FH2 protein (formin) Gene Family AT5G07780 52.5 1.1e-98 357.5
Hepe08g1059 . 75 321 FH2 protein (formin) Gene Family AT5G07780 50.8 3.6e-60 229.6
Hepe09g0095 . 1 1746 FH2 protein (formin) Gene Family AT5G07740 57.3 7.9e-314 1073.9
Hepe08g1059 . 60 321 FH2 protein (formin) Gene Family AT5G07740 62.5 9.2e-87 319.7
Hepe09g0095 . 1417 1746 FH2 protein (formin) Gene Family AT5G07760 70.8 2.5e-123 440.3
Hepe07g2489 . 988 1303 FH2 protein (formin) Gene Family AT5G07760 68.8 1.1e-115 414.8
Hepe01g1968 . 1264 1580 FH2 protein (formin) Gene Family AT5G07760 64.5 2.7e-109 393.7
Hepe09g0582 . 884 1204 FH2 protein (formin) Gene Family AT5G07760 63.2 1.5e-107 387.9
Hepe06g1825 . 942 1263 FH2 protein (formin) Gene Family AT5G07760 61.3 9.5e-107 385.2
Hepe08g1059 . 152 321 FH2 protein (formin) Gene Family AT5G07760 64.1 5.1e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010763 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32