Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1836 ATGGCGAAAACCGGCGTCTTTGATTCTAATCCTACAGTTATGGGGAAGGCGACGGAGTTGAAGAAGGAGTTACAGAGACTCATCGTTGCTATAATTGACGACGATAATTACTCCACCGACACCATCGATCATGCTAGAGAGATTATCTCTGCCCTCAAGGAGTTGAAACTCAGGAACAGATCGCGCTCTTCTAATCTTTACGAGAATCTCATTTGCCCTGATGAGTTTCGTTGTCCTCTTTCTAGAGAGCTCATGAGAGATCCTGTTGTTGTATCTTCTGGCGAGACTTACGACAGACCCTTCATTCACAAATGGTTAAAATCTGGAAACCGAATGTGCCCCAGAACCCAGCAAGTTCTTTCACACACGAACCTCACTCCCAATCACTTGATTCGCGAAATGATATCTCGGTGGTGTACAAGCCGGGGAATTGAGTTGCAAGATCGTGTCCATTATCTCGATGACGACCTAATAACGGAGGCTGATAGGGACTGTTTTCTTACGTTAATAGAGAAAATGTCTATGACGATATCTGACCAGAAAGCTGCTGCTAAGGAGCTTCGAATGTTGACAAAGCGGATGCCCTCATTTCGAGCACTTTTTGGGGAGTCCCTTGACGCTATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAGAGTAGTAGTATTCATGCGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAGCTTGTTGCTGAAACTCCCAAGGTAATACCTCTCCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCATATTTACTTTATCAGCTCTCGACTCAAACAAAGCACTTATCGGGAAATCTGGTGCCTTGAAATCACTTATCGATCTTTTAGAGGAGGGGCATCCATTATCTATCAAAGATGCTGCTTCTGCAATATTTAATCTTTGTATAATTCATGAAAACAAAGCAAGGGCTGTGCGAGATGGTGCAGTTCGTGTGCTTCTGAAAAAGATCATGAACCAAATGCATGTTGACGAGTTGTTGGCTATTCTTGCTATGCTTTCAAACCATCCAAAGGCTATCGAGGAAATAGGAGAACTTGGAGCTGTTCCTTTCTTGCTGAGAATTATCAGGGAAAGTTCTTGTTCACGAAACAAGGAGAATTGTATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAAGACGTGAGGGAGGAGGAGAAATGCTATCGAACTATCTCAGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCGTTGGCATACTCGAAAGACTGAACCGGGCGGTTAATATGACCCATACCGCATGA 1374 44.03 MAKTGVFDSNPTVMGKATELKKELQRLIVAIIDDDNYSTDTIDHAREIISALKELKLRNRSRSSNLYENLICPDEFRCPLSRELMRDPVVVSSGETYDRPFIHKWLKSGNRMCPRTQQVLSHTNLTPNHLIREMISRWCTSRGIELQDRVHYLDDDLITEADRDCFLTLIEKMSMTISDQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSSIHADLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAAIFTLSALDSNKALIGKSGALKSLIDLLEEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSNHPKAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDVREEEKCYRTISELAQNGTSRAKRKAVGILERLNRAVNMTHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69477124 69479902 + Hsped.06g18360.1 Hepe06g1836 573211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1836 457 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Hepe06g1836 457 CDD RING-Ubox_PUB 73 125 IPR045210 -
Hepe06g1836 457 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1836 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Hepe06g1836 457 SUPERFAMILY RING/U-box 72 148 - -
Hepe06g1836 457 PANTHER U BOX DOMAIN-CONTAINING 19 448 - -
Hepe06g1836 457 SUPERFAMILY ARM repeat 179 447 IPR016024 -
Hepe06g1836 457 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
Hepe06g1836 457 SMART arm_5 285 325 IPR000225 GO:0005515(InterPro)
Hepe06g1836 457 SMART arm_5 365 406 IPR000225 GO:0005515(InterPro)
Hepe06g1836 457 Pfam U-box domain 73 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1836 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1836 457 Gene3D - 175 453 IPR011989 -
Hepe06g1836 457 FunFam RING-type E3 ubiquitin transferase 156 453 - -
Hepe06g1836 457 Pfam Armadillo/beta-catenin-like repeat 287 324 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1836 Hepe-Chr6:69477124 Hepe08g1949 Hepe-Chr8:52935123 5.45e-107 dispersed
Hepe06g1836 Hepe-Chr6:69477124 Hepe08g0796 Hepe-Chr8:7142474 3.13e-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1836 K27971 - csv:101215688 781.941