Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1837 ATGGGGCCGGGCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGATCTTCTCAGAAAAGATGGCAACCACTATTTCCAGAAGGGCCGAATTGGAGCCGCCATTGAAGCCTATACCGAGGCCATTACGCTATGCCCGAATGTTCCTGTGTATTTGACCAACCGTGCTTTGTGTCATCGCAAGAGGAATGATTGGAAGAAGGTGGAGGATGATTGTCGGAGAGCTATTCAGCTTGATAAAAATTCTGTCAAGGGACATTACATGTTAGGACTAGCATTAATACAAAAAAAAGGCTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCGAAGAGTTATATAGTAGAGGAGATATGGCAGGAGCTTGCAAGAGCAAAATACAGGGAGTGGGAACAAGCATCCACCGAACGTTCATGGGAAATGCAGAGCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGACTGAACTCGAAGGGTTCGTAGATGAAGCCGACATTGCTCATCGTAAACAATTGAAGTCTCTAAGAAACGTGTTTGAAAAAGTTGCAGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATCACGCTCGATATTCTTCGCGATCCTGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATTCTCGACCATTTTCAAAAGGTGGGTAACTTCGATCCCATAACGCGGGAGTTGCTCTACGAGTCCCAGCTAGTACCGAACTTGGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA 846 45.74 MGPGVALSGAAKQADLLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEDDCRRAIQLDKNSVKGHYMLGLALIQKKGYPEGIKHLEKALDLGRGANPKSYIVEEIWQELARAKYREWEQASTERSWEMQSLKEACEAALEQKYFLDQTELEGFVDEADIAHRKQLKSLRNVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRELLYESQLVPNLAIKEAVQAFLDKHGWAYNTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69483816 69489988 - Hsped.06g18370.1 Hepe06g1837 573212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1837 281 Pfam TPR repeat 21 55 - -
Hepe06g1837 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Hepe06g1837 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SUPERFAMILY RING/U-box 199 278 - -
Hepe06g1837 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Hepe06g1837 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Hepe06g1837 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SUPERFAMILY TPR-like 12 135 IPR011990 GO:0005515(InterPro)
Hepe06g1837 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1837 K09561 - - csv:101215457 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1837 Hepe-Chr6:69483816 Hepe05g0444 Hepe-Chr5:5769797 2.54e-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003324 3 4 1 6 2 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 45