Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1837 ATGGGGCCGGGCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGATCTTCTCAGAAAAGATGGCAACCACTATTTCCAGAAGGGCCGAATTGGAGCCGCCATTGAAGCCTATACCGAGGCCATTACGCTATGCCCGAATGTTCCTGTGTATTTGACCAACCGTGCTTTGTGTCATCGCAAGAGGAATGATTGGAAGAAGGTGGAGGATGATTGTCGGAGAGCTATTCAGCTTGATAAAAATTCTGTCAAGGGACATTACATGTTAGGACTAGCATTAATACAAAAAAAAGGCTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCGAAGAGTTATATAGTAGAGGAGATATGGCAGGAGCTTGCAAGAGCAAAATACAGGGAGTGGGAACAAGCATCCACCGAACGTTCATGGGAAATGCAGAGCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGACTGAACTCGAAGGGTTCGTAGATGAAGCCGACATTGCTCATCGTAAACAATTGAAGTCTCTAAGAAACGTGTTTGAAAAAGTTGCAGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATCACGCTCGATATTCTTCGCGATCCTGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATTCTCGACCATTTTCAAAAGGTGGGTAACTTCGATCCCATAACGCGGGAGTTGCTCTACGAGTCCCAGCTAGTACCGAACTTGGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA 846 45.74 MGPGVALSGAAKQADLLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEDDCRRAIQLDKNSVKGHYMLGLALIQKKGYPEGIKHLEKALDLGRGANPKSYIVEEIWQELARAKYREWEQASTERSWEMQSLKEACEAALEQKYFLDQTELEGFVDEADIAHRKQLKSLRNVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRELLYESQLVPNLAIKEAVQAFLDKHGWAYNTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69483816 69489988 - Hsped.06g18370.1 Hepe06g1837 573212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1837 281 Pfam TPR repeat 21 55 - -
Hepe06g1837 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Hepe06g1837 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SUPERFAMILY RING/U-box 199 278 - -
Hepe06g1837 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Hepe06g1837 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe06g1837 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Hepe06g1837 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Hepe06g1837 281 SUPERFAMILY TPR-like 12 135 IPR011990 GO:0005515(InterPro)
Hepe06g1837 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1837 Hepe-Chr6:69483816 Hepe05g0444 Hepe-Chr5:5769797 2.54e-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1837 K09561 - csv:101215457 531.561