Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1849 ATGGGTAGCCGCTCGGTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAATCGCAACGACTGTTGGTTGATCATTGAGGACAAGGTATACGATGTAACAAAGTTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGCCATTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGCACTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTGCAAATAGAAAGTACACTCCTCCAAAGCAGCCCCTCTACAACCAAGACAAGACACCGGAATTCCTTATCAAGGTCCTTCAGTTTCTAGCTCCCCTGGTAATTTTGGGTTTGGCTTTTGGCATCCACATATATACCAAAACGACTTAG 402 46.27 MGSRSVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPANRKYTPPKQPLYNQDKTPEFLIKVLQFLAPLVILGLAFGIHIYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69606242 69610906 - Hsped.06g18490.1 Hepe06g1849 573224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1849 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Hepe06g1849 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Hepe06g1849 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Hepe06g1849 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037(InterPro)
Hepe06g1849 133 Gene3D - 2 85 IPR036400 -
Hepe06g1849 133 FunFam Cytochrome b5 type B 2 84 - -
Hepe06g1849 133 PANTHER CYTOCHROME B5 5 127 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Hepe06g1849 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Hepe06g1849 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Hepe06g1849 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Hepe06g1849 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Hepe06g1849 133 SMART Cyt_b5_2 7 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1849 K23490 - - csv:101212882 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2053 Hepe-Chr5:71018579 Hepe06g1849 Hepe-Chr6:69606242 1.84e-36 dispersed
Hepe06g0817 Hepe-Chr6:54970997 Hepe06g1849 Hepe-Chr6:69606242 2.57e-56 dispersed
Hepe06g1849 Hepe-Chr6:69606242 Hepe10g0572 Hepe-Chr10:6854369 1.05e-31 dispersed
Hepe08g2621 Hepe-Chr8:68185730 Hepe06g1849 Hepe-Chr6:69606242 2.07e-21 transposed
Hepe03g0349 Hepe-Chr3:5042167 Hepe06g1849 Hepe-Chr6:69606242 3.86e-59 wgd
Hepe05g1755 Hepe-Chr5:67866386 Hepe06g1849 Hepe-Chr6:69606242 1.43e-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156