Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1869 ATGGCGGATTCTCTTAGATTACTACAGTTTTCCACCGCTTCTTCATTGCTATTTCTTCTTCTCAACATCCTCTTCGTTCATTCCAGTTTTGCTGGAGATGAGAGATTTCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATGTTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGTATTCGAAACAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCATGTGGAACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACCCTCGTTGGCAACTACGACGAAAGCACCTAGCAGATTGTGGCATTGGCTTCGGTCGTAACGCTGTCGGTGGCCGGGATGGGCGATACTACGTCGTTTCAGATCCCAGCGACAATGATGCCGTCAATCCCAGACCAGGCACCCTTCGCCATGCTGTGATTCAAGACAGACCATTATGGATTGTGTTCAAAAGAGACATGGTGATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGCTCGTGGTGCTAATGTCCACATTGCTTATGGTGCTTGCATTACAATCCAATTCATTACCAATGTCATTATTCATGGTTTGCATATTCATGACTGCAAGCCAACGGGTAATGCCATGGTTCGAAGCTCCCCGAGTCATTATGGATGGAGGACAATGGCTGATGGCGATGGCATTTCCATTTTCGGGTCGAGTCATATTTGGATCGATCATAATTCTCTTTCTACTTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTTTTGGGACATAGTGATTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATTGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAACGGCGTATGGAAGCAGTGGAATTGGAGATCAGAGGGAGATCTTCTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCACCATTACTTCAACTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1308 45.34 MADSLRLLQFSTASSLLFLLLNILFVHSSFAGDERFQSFNSSSMADRYVKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPSDNDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTWNGVWKQWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTITSTAGALSCRRGYRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69767915 69772702 + Hsped.06g18690.1 Hepe06g1869 573244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1869 435 SMART amb_all 161 358 IPR002022 -
Hepe06g1869 435 Pfam Pectate lyase 181 350 IPR002022 -
Hepe06g1869 435 Gene3D - 86 428 IPR012334 -
Hepe06g1869 435 FunFam Pectate lyase 86 428 - -
Hepe06g1869 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Hepe06g1869 435 PANTHER PECTATE LYASE 18-RELATED 25 432 IPR045032 GO:0030570(InterPro)
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Hepe06g1869 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1869 Hepe-Chr6:69767915 Hepe10g0060 Hepe-Chr10:582201 2.52e-215 dispersed
Hepe03g0340 Hepe-Chr3:4785313 Hepe06g1869 Hepe-Chr6:69767915 2.27e-256 wgd
Hepe05g1732 Hepe-Chr5:67554278 Hepe06g1869 Hepe-Chr6:69767915 6.86e-260 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1869 K01728 - csv:101207204 815.839