Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1884 ATGGCAGAAATCACCTGCTCCCCCGACGACCTCCGCCTCCTCCTCGGCAGCTCCGCCAACGCCACCGGGGCCGCCGAATACATCTGCGGCCGGTTCGACGCGGTCTCGAGCAGATTTGTGGAGACAGCATATGCTGTTGACAACACTTACCTTCTATTTTCAGCCTACCTTGTTTTTGCAATGCAATTGGGATTTGCAATGCTTTGTGCTGGTTCTGTTAGAGCAAAGAACACAATGAATATTATGCTTACAAATGTTCTTGATGCAGCCACTGGTGGAATATTTTATTATGTTTTTGGCTTTGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGCCACCATTATTTTGGCCTCTCTCAGTTTCCTTCTACCACATTTGATTATGGATTCTTTTTGTTTCAATGGGCTTTTGCCATTGCTGCTGCTGGAATTACCAGTGGTTCCATTGCCGAACGGACTCGCTTTGTTGCGTATTTGATCTATTCCTCTGTCTTGACTGGTTTGATCTATCCAATTGTCTCTCATTGGTTTTGGTCAACCGACGGGTGGGGTAGCGCAGCTCGGACGGACAATCTCCTATTTGGCTCAGGAGTGATCGACTTCGCCGGCTCCGGCGTGGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCGTCATAGAAGGCCCTCGAATCGGCCGGTTCGACCACGCCGGCCGGTCCGTCGCCCTCCGCGGCCACAGCGGCACATTAGTCGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCACCACCACCGCCACCGCCCCCTTTTACGGCCAATGGAGCGCAATCGGCCGCACCGCCGTCACCACCACTCTCGCCGGCTGCACGGCGGCGCTAACAACCCTATTCGGCAAACGCCTCCTCGTCGGCCACTGGAACGTCACCGACGTCTGCAACGGTCTATTGGGCGGATTCGCCGCCATCACTTCCGGCTGCGCGGTGGTGGATCCGTGGGCGGCGATAGTTTGCGGGTTTTTCTCCGCCTGGGTTTTGATCGGATTCAATAAATTGGCGGAGAAATTGAAGTACGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGATGTGGGGCATGGGGGGTTTTGTTCACAGGCTTGTTTGCAAAACAGGATTATGTTAACGAAATTTATCCAGGGTTGCCGGAGAGGCCGTACGGACTGCTGATGGGCGGCGGCGGGAGGCTGCTGGCGGCGCATTTGGTGCAAATTTTGTCGATTGTTGCTTGGGTAAGTGCGACGATGGGGTTGGTTTTTTGGCTGTTGCATAAATTTCATTTGCTGAGGATCACGGCGGAGGAGGAGATGGCCGGAATGGACATGACGAGCCACGGCGGATTGGCTTATGTGTATAATGATGAAGAGAAAGGATTTGCTTGA 1458 54.12 MAEITCSPDDLRLLLGSSANATGAAEYICGRFDAVSSRFVETAYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNGFIGHHYFGLSQFPSTTFDYGFFLFQWAFAIAAAGITSGSIAERTRFVAYLIYSSVLTGLIYPIVSHWFWSTDGWGSAARTDNLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTTATAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGVLFTGLFAKQDYVNEIYPGLPERPYGLLMGGGGRLLAAHLVQILSIVAWVSATMGLVFWLLHKFHLLRITAEEEMAGMDMTSHGGLAYVYNDEEKGFA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70050425 70053149 - Hsped.06g18840.1 Hepe06g1884 573259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1884 485 NCBIfam ammonium transporter 47 475 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe06g1884 485 Gene3D Ammonium transporter AmtB like domains 29 484 IPR029020 -
Hepe06g1884 485 PANTHER AMMONIUM TRANSPORTER 36 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Hepe06g1884 485 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe06g1884 485 SUPERFAMILY Ammonium transporter 44 456 - -
Hepe06g1884 485 FunFam Ammonium transporter 28 485 - -
Hepe06g1884 485 Pfam Ammonium Transporter Family 50 475 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1884 Hepe-Chr6:70050425 Hepe08g1959 Hepe-Chr8:53532006 1.04e-257 dispersed
Hepe03g0333 Hepe-Chr3:4540992 Hepe06g1884 Hepe-Chr6:70050425 3.50e-249 wgd
Hepe05g1708 Hepe-Chr5:67348384 Hepe06g1884 Hepe-Chr6:70050425 1.61e-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1884 K03320 - csv:101223077 863.218