Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1901 ATGAAATTTGTTCCTTCCTCTAATTCAAGGATGAAAATTGAGGCGAGTCCTGCCTTATCCATTCCAAGTTCAAGTGCAAGACAGCATAGTAGTGCAGGGGTAAATGAAGAAATATCTAAATCATTAAGAGTTCTTTTACCCATTTGTTTGGAGGAGGTATATCCTAAATTGCCAAATTCTCAACAGGTTTCAATGGAAAGAGAGCTGGTTTCAAGGCCACTTGTTCATTCTAGTCATTTACAATCTAACAGTGGAGCGGTTGGCCATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTCCATTACTCATCTGTTTCATTTTATGGAAACCTATCAGATGCACCATTCATTTCTCAGTCATCAGCTAATGGTGCAGTGTTGCATTCTCATTCAGAACTCATTTCATCAACAAACCATCCAATAATTGGTGAAAATGACAATTCCTGGTGTTCGGAGTCACTGCCAGGTTTTTTGGGAGCTCCTGAAAATAACCCTGTTGGCAATGGTCATGTAGAAAACAATAGTTGCAGCTCTCTTATGGTATCAGATGAATTTAGTAAAGAAAACGATTGGCAAGATTGGACGGATAGACTAATAACTGATGATTCAATGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTACACCAAGCATCTAAACCAGCAATAAAATTGCAAGTGCAACAGTCTCAAGTTCAAAATCAGCTCCCTTCTTGTGGGGAAATTCCTATGATTTCCACCTCAACTACCTCTTCAAATGGAGCCTCATCCAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAAGCTGTGAGCAAACTTGGTGGTAGTGAAAGAGCTACTCCGAAGGGTGTTCTCAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGAACGGCTAGATACCAACCAGAATCCTCAAAAGGATCAATGGAGAAAAGCACCACCTCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTCGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAGATGATGTTTGAAAAACAATGCAAGTCAACCAATAACCTGACAAAGCCATCGACATCCACTTTGGAGGATTCTCCATTTTCAGATACAGTAGGTGATTTCTCTGCCAAAACAGAGCTGGAAAATCGCACAACCGATCCATCTGATGCTGATGCAATACCCGAAAAGGTTACTAATGAAGTAGACGTAGACGGGAAGCCGAAATCTCCTCGTCGGGAAGTCCCGGAGAATCCTGAGCCAGATATTTCTGAATCTAACTCATCAAAGCGCCAAAAGACAGATCAGTAG 1461 41.07 MKFVPSSNSRMKIEASPALSIPSSSARQHSSAGVNEEISKSLRVLLPICLEEVYPKLPNSQQVSMERELVSRPLVHSSHLQSNSGAVGHIFSSSPGFSTDLHYSSVSFYGNLSDAPFISQSSANGAVLHSHSELISSTNHPIIGENDNSWCSESLPGFLGAPENNPVGNGHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSMTSNWSDLLVDANVADLEPKMVHQASKPAIKLQVQQSQVQNQLPSCGEIPMISTSTTSSNGASSKPRMRWTPELHDAFVEAVSKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGSMEKSTTSLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSTNNLTKPSTSTLEDSPFSDTVGDFSAKTELENRTTDPSDADAIPEKVTNEVDVDGKPKSPRREVPENPEPDISESNSSKRQKTDQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70191849 70196652 + Hsped.06g19010.1 Hepe06g1901 573276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1901 486 NCBIfam myb-like DNA-binding domain, SHAQKYF class 269 323 IPR006447 GO:0003677(InterPro)
Hepe06g1901 486 MobiDBLite consensus disorder prediction 430 486 - -
Hepe06g1901 486 FunFam Myb family transcription factor 268 326 - -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 402 429 - -
Hepe06g1901 486 Pfam Myb-like DNA-binding domain 271 322 IPR001005 -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 251 271 - -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 402 486 - -
Hepe06g1901 486 Gene3D - 268 327 - -
Hepe06g1901 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 266 326 IPR017930 -
Hepe06g1901 486 SUPERFAMILY Homeodomain-like 267 323 IPR009057 -
Hepe06g1901 486 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 175 476 IPR046955 GO:0003700(InterPro)
Hepe06g1901 486 MobiDBLite consensus disorder prediction 251 270 - -
Hepe06g1901 486 Pfam MYB-CC type transfactor, LHEQLE motif 355 400 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0103 Hepe-Chr4:29807892 Hepe06g1901 Hepe-Chr6:70191849 7.16e-33 dispersed
Hepe04g0213 Hepe-Chr4:43616532 Hepe06g1901 Hepe-Chr6:70191849 3.34e-12 dispersed
Hepe05g0591 Hepe-Chr5:8771178 Hepe06g1901 Hepe-Chr6:70191849 2.62e-32 dispersed
Hepe06g1901 Hepe-Chr6:70191849 Hepe08g0654 Hepe-Chr8:5829050 2.66e-21 dispersed
Hepe06g1901 Hepe-Chr6:70191849 Hepe09g1430 Hepe-Chr9:27131565 3.64e-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55849 PF00249 Myb_DNA-binding 9.50E-09 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1901 - - - 0.0