Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1901 ATGAAATTTGTTCCTTCCTCTAATTCAAGGATGAAAATTGAGGCGAGTCCTGCCTTATCCATTCCAAGTTCAAGTGCAAGACAGCATAGTAGTGCAGGGGTAAATGAAGAAATATCTAAATCATTAAGAGTTCTTTTACCCATTTGTTTGGAGGAGGTATATCCTAAATTGCCAAATTCTCAACAGGTTTCAATGGAAAGAGAGCTGGTTTCAAGGCCACTTGTTCATTCTAGTCATTTACAATCTAACAGTGGAGCGGTTGGCCATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTCCATTACTCATCTGTTTCATTTTATGGAAACCTATCAGATGCACCATTCATTTCTCAGTCATCAGCTAATGGTGCAGTGTTGCATTCTCATTCAGAACTCATTTCATCAACAAACCATCCAATAATTGGTGAAAATGACAATTCCTGGTGTTCGGAGTCACTGCCAGGTTTTTTGGGAGCTCCTGAAAATAACCCTGTTGGCAATGGTCATGTAGAAAACAATAGTTGCAGCTCTCTTATGGTATCAGATGAATTTAGTAAAGAAAACGATTGGCAAGATTGGACGGATAGACTAATAACTGATGATTCAATGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTACACCAAGCATCTAAACCAGCAATAAAATTGCAAGTGCAACAGTCTCAAGTTCAAAATCAGCTCCCTTCTTGTGGGGAAATTCCTATGATTTCCACCTCAACTACCTCTTCAAATGGAGCCTCATCCAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAAGCTGTGAGCAAACTTGGTGGTAGTGAAAGAGCTACTCCGAAGGGTGTTCTCAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGAACGGCTAGATACCAACCAGAATCCTCAAAAGGATCAATGGAGAAAAGCACCACCTCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTCGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAGATGATGTTTGAAAAACAATGCAAGTCAACCAATAACCTGACAAAGCCATCGACATCCACTTTGGAGGATTCTCCATTTTCAGATACAGTAGGTGATTTCTCTGCCAAAACAGAGCTGGAAAATCGCACAACCGATCCATCTGATGCTGATGCAATACCCGAAAAGGTTACTAATGAAGTAGACGTAGACGGGAAGCCGAAATCTCCTCGTCGGGAAGTCCCGGAGAATCCTGAGCCAGATATTTCTGAATCTAACTCATCAAAGCGCCAAAAGACAGATCAGTAG 1461 41.07 MKFVPSSNSRMKIEASPALSIPSSSARQHSSAGVNEEISKSLRVLLPICLEEVYPKLPNSQQVSMERELVSRPLVHSSHLQSNSGAVGHIFSSSPGFSTDLHYSSVSFYGNLSDAPFISQSSANGAVLHSHSELISSTNHPIIGENDNSWCSESLPGFLGAPENNPVGNGHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSMTSNWSDLLVDANVADLEPKMVHQASKPAIKLQVQQSQVQNQLPSCGEIPMISTSTTSSNGASSKPRMRWTPELHDAFVEAVSKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGSMEKSTTSLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSTNNLTKPSTSTLEDSPFSDTVGDFSAKTELENRTTDPSDADAIPEKVTNEVDVDGKPKSPRREVPENPEPDISESNSSKRQKTDQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70191849 70196652 + Hsped.06g19010.1 Hepe06g1901 573276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1901 486 NCBIfam myb-like DNA-binding domain, SHAQKYF class 269 323 IPR006447 GO:0003677(InterPro)
Hepe06g1901 486 MobiDBLite consensus disorder prediction 430 486 - -
Hepe06g1901 486 FunFam Myb family transcription factor 268 326 - -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 402 429 - -
Hepe06g1901 486 Pfam Myb-like DNA-binding domain 271 322 IPR001005 -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 251 271 - -
Hepe06g1901 486 MobiDBLite consensus disorder prediction 402 486 - -
Hepe06g1901 486 Gene3D - 268 327 - -
Hepe06g1901 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 266 326 IPR017930 -
Hepe06g1901 486 SUPERFAMILY Homeodomain-like 267 323 IPR009057 -
Hepe06g1901 486 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 175 476 IPR046955 GO:0003700(InterPro)
Hepe06g1901 486 MobiDBLite consensus disorder prediction 251 270 - -
Hepe06g1901 486 Pfam MYB-CC type transfactor, LHEQLE motif 355 400 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1901 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0103 Hepe-Chr4:29807892 Hepe06g1901 Hepe-Chr6:70191849 7.16e-33 dispersed
Hepe04g0213 Hepe-Chr4:43616532 Hepe06g1901 Hepe-Chr6:70191849 3.34e-12 dispersed
Hepe05g0591 Hepe-Chr5:8771178 Hepe06g1901 Hepe-Chr6:70191849 2.62e-32 dispersed
Hepe06g1901 Hepe-Chr6:70191849 Hepe08g0654 Hepe-Chr8:5829050 2.66e-21 dispersed
Hepe06g1901 Hepe-Chr6:70191849 Hepe09g1430 Hepe-Chr9:27131565 3.64e-86 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55849 PF00249 Myb_DNA-binding 9.50E-09 CL0123 Hepe TF