Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1909 ATGAAGAGTGACGTTAAGATAGAAAGGGGGAGGAGAGCAGGAAAAGGGAAGAATATTAGGAAGATAATGAACTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGATGATATGATTACTCGATCAGAATCGCCTTCGGCTTTGGAGAATTCGGCAAGCGAACGCTCTTCACGGACTGGCGAGATCATCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCAGAGTCTTCGCTTCGTGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGGAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATTCCTAGAAGAGGAGACCGTCCGAGGAGACGATCGCAAAATTCTACTACGCCGCCGATGTCTATGCATGCAGTCAGTTTACTATTGGAAGCCATCTTTCTCAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTCGAGCTGCTACCAGATCTATGGAAACTAGGCGATTCTTCTCAAGAGGCGATCCTTTCGTATCGGCGGGCACTCCTTCATCAGTGGAACCTTGATGCGGAAACCGCGGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTTTACAGTGGATGTGAAGCGTGCCCTCCGAATCTTCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTATTATTTATGATACTACTAAGAAAAGTTGTTCTTAAAAAGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTATGCTCTAACAATATCAGGGGATACAAGGGCTTTAGCAGGCCAGATAGAGGAATTGCCTCCTGGGATTCTACATCGAAAAGATAGGTATCACGATCTAGCTCTTTGTTATTATGGAGCGGACGATGACTTGACTGCTTTGAATATGTTGAGGAAATTGTTGGGTAGTCATGAAGATCCTAAATCTCTTCCTGCTTTACTAATGGCATCGAAGATTTGTGGAGAGAACCGCAACCTTGCTGAAGAAGGAACGAGTTTTGCTCGTAGAGCTCTTGAAAAATTGGATGCTGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCATTGTCTGTATACTCTAAATCAGCCATTGCTGATTCCGAGCGGTCCACCAGCCAATCTGAGGCAATGGAGGCCCTGGAAGCTGCGCGGAAGAAGACTAGAATGACCAACCCTAACATTCTCTATCATTTGAGTCTTGAATATGCTGATGATAGGAAGTTGGATTCGGCACTTCGTTACGCAAAGAAGTGTCTCAAACTGGAAGGTGGTTCTAATGTTAGAACTTGGTTACTGTTGGCTAGGATTCTCTCTGCCCAAAAACGATTTACGGATGGCGAAAGTATCATAAATGCAGCTTTGGAGCAGACGGGGAAATGGGATCAAGGCGAATTGCTTCGAACAAAAGCAAAGCTTCTGATTGCACAGGATGAGTTGAAAGGTGCTATTGAGACTTATACTCAGTTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTAGATAAGAGCAGCAGAAATTATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTACATAAGGCTCTCTCTGTGGCGCGATGCCGAGGCCTGCCTTTCGAAGTCGAAGGCCATCTGTTCTCATTCCGCTTCTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGCTTGTATACAGAAGCTCTGAAAGCTTTTGTGGTTGCTCTGGACATCGATCCCGTTCATGTCCCGAGCTTGGTTTCGTCTGCTGTCGCCATCAGACATTGCGGCCACCAATCGCACCCCGTTATTCGCAGCTTTTTGATGGATGCTCTAAGGCTCAATCAGACGAACCACGCTGCGTGGTACAACCTCGGGATATTCTATAAATCGGAAGGTACCAAGTCATCATTGGTAGAAGCTGTTGAATGTTTTGAGGCTGCAGCTTTTCTTGAAGAGTCTTCTCCTGTTGAACCCTTTAGATAA 2205 43.81 MKSDVKIERGRRAGKGKNIRKIMNCLCSGEKRAGDDMITRSESPSALENSASERSSRTGEIIKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIPRRGDRPRRRSQNSTTPPMSMHAVSLLLEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPDLWKLGDSSQEAILSYRRALLHQWNLDAETAARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKKIDWDPSILDHLSYALTISGDTRALAGQIEELPPGILHRKDRYHDLALCYYGADDDLTALNMLRKLLGSHEDPKSLPALLMASKICGENRNLAEEGTSFARRALEKLDAGCDQLEGVANCLLGVSLSVYSKSAIADSERSTSQSEAMEALEAARKKTRMTNPNILYHLSLEYADDRKLDSALRYAKKCLKLEGGSNVRTWLLLARILSAQKRFTDGESIINAALEQTGKWDQGELLRTKAKLLIAQDELKGAIETYTQLLAVFQVQSKSFGLGDKKLDKSSRNYARRLQLEVWHDLALVYIRLSLWRDAEACLSKSKAICSHSASRCHITGMLYEAKGLYTEALKAFVVALDIDPVHVPSLVSSAVAIRHCGHQSHPVIRSFLMDALRLNQTNHAAWYNLGIFYKSEGTKSSLVEAVECFEAAAFLEESSPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70244692 70249317 - Hsped.06g19090.1 Hepe06g1909 573284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1909 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 Gene3D Tetratricopeptide repeat domain 65 586 IPR011990 GO:0005515(InterPro)
Hepe06g1909 734 SUPERFAMILY TPR-like 532 706 IPR011990 GO:0005515(InterPro)
Hepe06g1909 734 Gene3D Tetratricopeptide repeat domain 587 730 IPR011990 GO:0005515(InterPro)
Hepe06g1909 734 SUPERFAMILY TPR-like 462 560 IPR011990 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Hepe06g1909 734 MobiDBLite consensus disorder prediction 33 62 - -
Hepe06g1909 734 MobiDBLite consensus disorder prediction 42 56 - -
Hepe06g1909 734 PANTHER PROTEIN NPG1 12 734 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1909 Hepe-Chr6:70244692 Hepe08g1336 Hepe-Chr8:15327637 8.36e-180 dispersed
Hepe01g1526 Hepe-Chr1:80489946 Hepe06g1909 Hepe-Chr6:70244692 4.57e-198 transposed
Hepe05g1675 Hepe-Chr5:66675980 Hepe06g1909 Hepe-Chr6:70244692 1.27e-298 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1909 K21843 - csv:101223229 1251.88