Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1929 ATGGAATCCTCTTACTTTTCCTTCTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGCTCATCGGAATCGGACTTCTCATGGACCGATTTTTTCTCCATCCAGAGTACCCTAGAGAACTCAATCACACTACCGGATGAGTTTCTCGGCAATCAAATATCGGAATCGGAATCGAAGATCGTAGTGAAGGAAGAAATCGAAGTGAATTCGATTGATTTCGAGGAGAAGAGTTACAGAGGAGTAAGGCGGCGGCCATGGGGGAAATACGCGGCGGAGATTAGGGATTCAACGAGGCATGGAGTTCGAGTTTGGCTTGGGACATTCGATAGTGCGGAAGCCGCCGCTTTAGCGTACGATCAAGCAGCATTTTCGATGAGAGGAGCATTGGCGGTGCTCAATTTTCCGGTGGAAATGGTGAGAGAATCACTGCAGAATATTAAGCATCAATTGGAAGAAGGTTGCTCTCCGGTGGTGGCTTTGAAGAGAAAACACTCGCTGAGAAGAAAATCAACGGCGGCGGCGGCGGCGGTGGAGAAGAAGAAAATGAAGAAAAAGAACAATGTGGTAATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTGAGTTCATGTGAGAGTAGTGCCATTAATATTATTACTCCTTTTTAA 660 45.76 MESSYFSFSDSDFSTESSFGSSESDFSWTDFFSIQSTLENSITLPDEFLGNQISESESKIVVKEEIEVNSIDFEEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGALAVLNFPVEMVRESLQNIKHQLEEGCSPVVALKRKHSLRRKSTAAAAAVEKKKMKKKNNVVILEDLGTEYLEELLMLSSCESSAINIITPF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70505610 70506416 - Hsped.06g19290.1 Hepe06g1929 573304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1929 219 FunFam Ethylene-responsive transcription factor 2 76 137 - -
Hepe06g1929 219 SMART rav1_2 77 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 CDD AP2 76 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 Pfam AP2 domain 77 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1929 219 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677(InterPro)
Hepe06g1929 219 PANTHER DNA-BINDING DOMAIN 33 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2067 Hepe-Chr3:78552950 Hepe06g1929 Hepe-Chr6:70505610 4.50e-46 dispersed
Hepe05g1651 Hepe-Chr5:66377485 Hepe06g1929 Hepe-Chr6:70505610 1.54e-49 dispersed
Hepe06g1929 Hepe-Chr6:70505610 Hepe07g0285 Hepe-Chr7:2896901 1.56e-22 dispersed
Hepe03g0273 Hepe-Chr3:3590214 Hepe06g1929 Hepe-Chr6:70505610 1.05e-27 wgd
Hepe03g1176 Hepe-Chr3:65457065 Hepe06g1929 Hepe-Chr6:70505610 9.04e-19 wgd
Hepe05g1649 Hepe-Chr5:66337922 Hepe06g1929 Hepe-Chr6:70505610 1.97e-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55853 PF00847 AP2 1.20E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1929 K14516 - csv:101220325 284.648