Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1935 ATGACAGGTTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGGTGTGTTTTTGCTCCTTATTTTTGCCATGAACAAGGAGCAACTCATTTTGCTGCCATTCATAAGGTCTTTGGAGCTAGCAATGTCTCTAAGCTTCTTGCTCGTCTTCCTGTTAGTGAGCGATGTGAGGCTGCTGTTACCATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAATCTCCAGGCACAGCTTGCTTCTCTCAAGGAACAAGCAGCGGAAAGCATTATGAACGGCTCCGGTAACGGCGTCGGCGTCGGTGTTCATGAGAAGATGAATTGCAGGAAGGCTCCTTCTCATTTCCAAGATCTCCAAAGCTGGTTTCAATCGGACCAACCGAACATAACGCACGAGTTCAACCCGAACCCGGCTCACAATTCGGCATCGAACCCTTATTATGATGAGAATTATCGCATTATGGTTAATTCCCAATCCAATGGGAACTATGATCATCACATGGCCAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGCCTATTCCATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGCAATACTCAACATTGGTGA 729 44.17 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAESIMNGSGNGVGVGVHEKMNCRKAPSHFQDLQSWFQSDQPNITHEFNPNPAHNSASNPYYDENYRIMVNSQSNGNYDHHMAKMEESGSYGSFEETSAYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNTQHW 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70569932 70571126 + Hsped.06g19350.1 Hepe06g1935 573310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1935 242 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Hepe06g1935 242 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Hepe06g1935 242 Coils Coil 87 114 - -
Hepe06g1935 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0460 Hepe-Chr3:6986410 Hepe06g1935 Hepe-Chr6:70569932 5.60e-44 dispersed
Hepe03g2103 Hepe-Chr3:79041611 Hepe06g1935 Hepe-Chr6:70569932 7.55e-64 dispersed
Hepe05g0787 Hepe-Chr5:18624782 Hepe06g1935 Hepe-Chr6:70569932 1.35e-45 dispersed
Hepe06g1935 Hepe-Chr6:70569932 Hepe07g2205 Hepe-Chr7:66445971 9.63e-32 dispersed
Hepe06g1935 Hepe-Chr6:70569932 Hepe06g1936 Hepe-Chr6:70591110 1.49e-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55854 PF03195 LOB 4.40E-36 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1935 K13945 - csv:101214764 395.586