Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1936 ATGGCTTCTACTAATAGTACTGCAAATAGTGTCTCTTCAGGCAGTCCCAGCACTGGCTCAGGCTCTCCTTGTGGAGCATGCAAGTTTCTAAGGCGAAAATGTGTGGCTGATTGCATTTTTGCTCCTTATTTTAGCTGTGAACAAGGCCCTGCTACATTTGCAGCCATTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAGTTGCTTCTCCATCTTCCTGCTCCTCATCGTTCTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCCCGGATTCGTGACCCCGTTTATGGTTGCGTTGCTCATATTTTCGCTCTCCAACAACAGGTGGCATACTTGCAAACACAGCTGACGCAAGCCAAGGCTCAACTTGCACAAACCCTGATTGATTCAGGAGGGAATATGGAGATTCAATGGACAGGCAACTTCAATAATAATCTCCCCAATGGAATTCCAAATTTTCCAAATTATCAGACTCAGATTATGAACCCTACAGTTTCTCCTCAGAGCTCTCAGGAATCAGCTGCCAACAATGATGAAGCATTATTCATGAAGTTTCAAGAGAGCCAAAGCAGATCATCAGAAGCTCAATTTCAACAAATTTCTAGAAAAAGACTACCTAATTCTACTTGTCATGGTGATGTTGGTGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 687 43.09 MASTNSTANSVSSGSPSTGSGSPCGACKFLRRKCVADCIFAPYFSCEQGPATFAAIHKVFGASNVSKLLLHLPAPHRSEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQTQLTQAKAQLAQTLIDSGGNMEIQWTGNFNNNLPNGIPNFPNYQTQIMNPTVSPQSSQESAANNDEALFMKFQESQSRSSEAQFQQISRKRLPNSTCHGDVGELQALALRMMRN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70591110 70592403 - Hsped.06g19360.1 Hepe06g1936 573311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1936 228 Pfam Lateral organ boundaries (LOB) domain 23 121 IPR004883 -
Hepe06g1936 228 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Hepe06g1936 228 MobiDBLite consensus disorder prediction 188 207 - -
Hepe06g1936 228 MobiDBLite consensus disorder prediction 1 22 - -
Hepe06g1936 228 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 219 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1877 Hepe-Chr5:69076213 Hepe06g1936 Hepe-Chr6:70591110 1.01e-47 dispersed
Hepe06g1936 Hepe-Chr6:70591110 Hepe08g0630 Hepe-Chr8:5603072 2.16e-36 dispersed
Hepe06g1935 Hepe-Chr6:70569932 Hepe06g1936 Hepe-Chr6:70591110 1.49e-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55855 PF03195 LOB 9.70E-37 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1936 K13944 - csv:101214521 276.559