Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1943 ATGGGTGAGAAATTTTGGGCGAACGAAGAAAAAAGGGTTTTGGTAGAATCAGTTGTTGGTAGTGAAGCTTGTGACTTCTTGATTTCATTGGCATCTACCAATACTTTGCCAGAGTCCTTGCAATTTTCTGTTGGTGATTTGAGTGTGAATCAAGGGCTGAGCCAATTTTTGGATGGTTCGAGTTGGAACTATGCAATCTTTTGGCGTGTCGTTAGCTCGAAATCTGGGGCTTTGGCTTTGATTTGGGGTGATGGGAACTGTCATGATCCTCTTTTGGATGGTAAGGGAGAGAAGAAAGAGGAATTGAAGAGGAAAGTGCTTCAAATGCTTCAATCCTCTTTTGGAGGCTCTGATAAAGATGGATTTGGGCCAAGGAGGGAGGAAGTATCCGATATCGAGATGCTTTACCTAACTTCAATGTATTATAAGTTTATGTGTGACTCTGGAAGCGGTCTTGGGGAGTCGTACAAATCCGGCAAGTCTATATGGGCTTCGGATGTAACGAGTTGTTTGCGTAATTACCAATCTAGAGGGTTTCTAGCTAAAATGGCTGGTTTCCAGACATTAGTGTTTGTACCTGTAAAGTTGGGAGTTGTTGAACTTGGATCTGTCAAATCAATTCCTGAAGATCAGGGTGTTCTGGAGTCGGTTCGAGCTGCCTTTGGGGGATCGAATACTGCCCAATTAAAGACCTTCCCAAGGATCTTTGGTCATGAACTAAGTTTAGGTGGAACAAAACCTCGATCGCTTAGCATTAATTTTTCGCCTAAGATGGAAGACGATACAAATTTTTCTTCAGAAGGTTATGAGCTGCAAGGTTTAGGTGCTAATCATATGTTTGGAAACTCTTCTAACGGGTGTCGAAGCGATGATAATGATGCGAAGATGTTTCCACATGGGAACCAAGAAATTGTTGGGGGTTTCAATGCCCAAACAAGACTTTCGACTTTGGAGTTCCCGAGGGAGGAGTCGTCCCCACAAGGAGATGACAGAAAACCTAGGAAGAGAGGGAGAAAGCCTGCTAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGACGTGAGAAACTTAACCAACGATTCTATGCATTAAGGGCTGTTGTCCCGAATATCTCTAAGATGGACAAGGCTTCTCTGCTCGGCGATGCTATTACGTACATCACCGATCTCCAGATGAAAATTAAGGTTATGGAGACTGAAAAACAGATGGCTAATGGCAGGCAGAAAAATGCAGAAGTCGATTTTCAGGCAAGAGAAGAGGATGCTGTTGTGAGGGTGAGTTGTCCATTGGACTCGCACCCTGTTTCTAGAGTAATCAGAACATTTAGGGAACATCAAATTGAAACTCAAGAATCCAACGTTACGACCACGACCGACAACGACAAAGTTATTCACTCATTCTCGATTAGAACTGAAGGTGGTGCTGCAGAACAATTGAAGGAGAAGCTGGTGGCTGCCCTGTCAAAATGA 1482 43.72 MGEKFWANEEKRVLVESVVGSEACDFLISLASTNTLPESLQFSVGDLSVNQGLSQFLDGSSWNYAIFWRVVSSKSGALALIWGDGNCHDPLLDGKGEKKEELKRKVLQMLQSSFGGSDKDGFGPRREEVSDIEMLYLTSMYYKFMCDSGSGLGESYKSGKSIWASDVTSCLRNYQSRGFLAKMAGFQTLVFVPVKLGVVELGSVKSIPEDQGVLESVRAAFGGSNTAQLKTFPRIFGHELSLGGTKPRSLSINFSPKMEDDTNFSSEGYELQGLGANHMFGNSSNGCRSDDNDAKMFPHGNQEIVGGFNAQTRLSTLEFPREESSPQGDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVMETEKQMANGRQKNAEVDFQAREEDAVVRVSCPLDSHPVSRVIRTFREHQIETQESNVTTTTDNDKVIHSFSIRTEGGAAEQLKEKLVAALSK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 70723119 70725333 - Hsped.06g19430.1 Hepe06g1943 573318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1943 493 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983(InterPro)
Hepe06g1943 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 411 IPR036638 GO:0046983(InterPro)
Hepe06g1943 493 SMART finulus 351 400 IPR011598 GO:0046983(InterPro)
Hepe06g1943 493 Gene3D - 338 410 IPR036638 GO:0046983(InterPro)
Hepe06g1943 493 FunFam Transcription factor bHLH13 338 412 - -
Hepe06g1943 493 PANTHER MYC 47 493 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Hepe06g1943 493 CDD bHLH_AtAIB_like 342 406 - -
Hepe06g1943 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983(InterPro)
Hepe06g1943 493 MobiDBLite consensus disorder prediction 323 356 - -
Hepe06g1943 493 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 221 IPR025610 -
Hepe06g1943 493 ProSiteProfiles ACT domain profile. 427 493 IPR002912 -
Hepe06g1943 493 MobiDBLite consensus disorder prediction 317 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2030 Hepe-Chr5:70826842 Hepe06g1943 Hepe-Chr6:70723119 1.16e-91 dispersed
Hepe06g1772 Hepe-Chr6:68801441 Hepe06g1943 Hepe-Chr6:70723119 3.67e-30 dispersed
Hepe06g1943 Hepe-Chr6:70723119 Hepe10g1639 Hepe-Chr10:53096347 1.40e-15 dispersed
Hepe06g1943 Hepe-Chr6:70723119 Hepe06g1020 Hepe-Chr6:58162673 6.81e-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55858 PF14215 bHLH-MYC_N 1.90E-39 CL0161 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1943 - - - 0.0